Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 6.0e-121 437.6 227 100.0
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 2.8e-110 402.1 227 89.4
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.6e-110 401.7 227 87.7
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 2.3e-109 399.1 227 89.0
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 3.1e-109 398.7 227 87.2
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 8.9e-109 397.1 228 88.2
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.5e-108 396.4 227 87.7
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.5e-108 396.4 227 86.8
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.5e-108 396.4 227 87.7
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.6e-108 395.6 227 88.5
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.4e-108 394.8 227 87.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 5.8e-108 394.4 227 86.8
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 7.6e-108 394.0 227 85.5
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 86.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 2.2e-107 392.5 226 87.6
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 2.2e-107 392.5 227 86.3
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.2e-107 392.5 228 87.3
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.9e-107 392.1 227 87.2
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 2.9e-107 392.1 227 86.3
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 85.0
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.3e-107 390.6 223 86.5
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 84.6
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 85.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.2e-106 388.7 228 86.8
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 84.1
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 7.1e-106 387.5 219 89.5
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.1e-105 386.0 226 85.4
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.5e-105 385.2 227 83.3
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.5e-105 385.2 227 84.6
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 4.6e-105 384.8 226 85.4
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 83.3
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 6.0e-105 384.4 215 88.4
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 7.8e-105 384.0 226 84.5
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 84.1
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.0e-104 383.6 226 85.8
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.3e-104 383.3 227 83.7
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 84.6
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 84.1
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 3.9e-104 381.7 226 84.5
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 85.0
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 85.9
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.6e-104 380.9 226 85.0
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 84.1
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 84.1
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-103 380.2 227 84.1
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.5e-103 379.8 229 83.4
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 83.7
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 83.3
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 83.3
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 5.6e-103 377.9 228 86.0
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 5.6e-103 377.9 229 83.4
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.6e-103 377.9 229 83.0
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 7.3e-103 377.5 219 84.9
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 82.4
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.6e-102 376.3 229 82.5
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.1e-102 375.9 227 82.8
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 2.1e-102 375.9 229 83.4
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 3.6e-102 375.2 229 84.7
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 82.4
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.6e-102 375.2 228 86.0
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.1
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 4.7e-102 374.8 228 85.5
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.7e-102 374.8 228 85.5
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.9
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 82.8
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 81.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 83.3
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 81.5
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 8.1e-102 374.0 228 84.6
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 82.8
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.9
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 81.1
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 6.8e-101 370.9 227 80.6
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 6.8e-101 370.9 217 85.3
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 8.9e-101 370.5 227 81.9
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 8.9e-101 370.5 214 85.5
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 82.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.0e-100 369.4 218 85.8
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 80.6
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 80.2
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 82.8
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.3e-99 366.7 224 82.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 82.4
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 81.5
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.2e-99 365.9 207 87.4
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.9e-99 365.5 233 79.8
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 4.9e-99 364.8 227 81.9
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 8.4e-99 364.0 227 80.2
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.4e-98 363.2 227 80.2
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.2e-98 362.1 214 83.2
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.1e-97 359.4 205 86.3
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.1e-97 359.4 214 85.0
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.7e-97 359.0 227 80.2
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.7e-97 359.0 217 84.3
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.7e-96 356.3 214 83.2
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.0e-96 355.5 214 84.1
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.0e-96 355.5 214 83.6
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.9e-96 355.1 206 85.4
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 3.9e-96 355.1 214 80.8
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 5.1e-96 354.8 227 78.0
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 8.7e-96 354.0 227 77.1
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.5e-95 353.2 215 80.9
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.5e-95 353.2 206 84.0
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.5e-95 353.2 225 78.7
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 4.3e-95 351.7 210 84.3
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 3.6e-94 348.6 265 68.7
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 6.2e-94 347.8 214 80.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.1e-93 347.1 213 80.3
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 9.0e-93 344.0 237 75.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 4.9e-91 338.2 202 85.1
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 4.9e-91 338.2 214 77.1
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 3.2e-90 335.5 227 74.4
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-88 329.7 228 74.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 3.0e-88 328.9 195 83.6
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.1e-88 328.2 190 85.8
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 6.2e-86 321.2 191 84.3
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 6.2e-86 321.2 212 75.5
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.2e-84 317.0 227 74.9
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.4e-82 310.1 199 77.9
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.8e-78 295.8 227 66.5
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.4e-77 293.5 181 82.9
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 4.2e-74 282.0 164 84.8
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 5.5e-74 281.6 216 68.1
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.6e-73 280.0 216 67.6
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.0e-72 277.3 227 67.4
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.3e-72 276.9 229 67.2
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.1e-71 273.9 193 75.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.3e-71 272.3 164 81.7
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.1e-69 265.4 160 82.5
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 5.0e-67 258.5 197 70.1
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 8.4e-67 257.7 209 62.7
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.9e-66 256.5 150 82.0
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.3e-64 249.6 153 79.7
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 8.2e-62 241.1 154 79.2
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 6.9e-61 238.0 237 52.7
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 5.7e-55 218.4 215 53.0
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 3.4e-52 209.1 201 58.7
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 5.9e-52 208.4 131 75.6
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 8.0e-41 171.4 100 80.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.8e-40 170.2 108 78.7
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-39 167.5 115 72.2
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.5e-31 138.3 109 67.9
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.2e-30 136.7 87 77.0
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.8e-29 133.7 92 68.5
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 6.5e-27 125.2 135 53.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.5e-26 123.2 113 61.9
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 6.6e-19 98.6 63 73.0
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 8.6e-19 98.2 51 94.1
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.8e-16 88.6 97 51.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.7e-14 84.0 70 67.1
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.4e-13 80.9 114 43.0
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 2.0e-12 77.0 68 54.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 1.6e-09 67.4 208 27.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.1e-09 67.0 63 60.3


User provided reference genes

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