Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.9e-235 818.1 402 100.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 4.4e-220 767.7 402 91.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.9e-219 765.0 402 92.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 6.4e-219 763.8 402 91.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 92.3
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.3
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.5
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 90.5
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.5
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.3
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.5
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 90.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 91.5
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 91.8
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.8
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 89.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 89.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.8
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.5
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 91.5
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.8
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.5
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.8
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 89.6
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.5
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 91.0
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 89.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.3
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.3
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.3
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.0
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.5
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.0
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.6
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.6
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 88.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 90.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.0
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.8
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.3e-214 749.6 401 89.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 90.0
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 88.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 88.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 88.8
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 88.6
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 89.6
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 89.6
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 88.8
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 89.8
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 88.8
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.1
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.6
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 89.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 89.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 89.6
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 3.4e-212 741.5 416 86.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 90.0
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 89.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 87.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.6
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.6
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 89.3
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.7e-211 739.2 416 86.5
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.9e-211 738.4 411 87.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 88.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.4e-210 736.1 402 87.1
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.3
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.3
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 88.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.1
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.2e-209 733.0 438 82.2
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 88.1
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 86.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 86.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 86.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 6.0e-209 730.7 417 85.4
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 87.3
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 86.6
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 86.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 86.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 87.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 86.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 85.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 87.1
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 86.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 85.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 86.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.1
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 87.1
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 8.1e-206 720.3 441 81.2
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.8e-205 719.2 429 82.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 3.1e-205 718.4 398 86.2
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 85.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 3.8e-203 711.4 419 84.2
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.9e-203 711.1 400 85.2
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 8.4e-203 710.3 401 85.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.4e-202 709.5 402 86.1
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 9.6e-199 696.8 402 81.3
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.8e-198 695.3 402 83.1
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.8e-198 695.3 402 85.1
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.1e-197 693.3 402 82.8
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 6.5e-195 684.1 402 83.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.0e-192 676.8 375 86.9
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.3e-192 676.4 402 81.3
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-192 676.4 402 81.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 80.8
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 9.7e-191 670.2 402 79.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.4e-189 666.4 357 88.8
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.8e-189 666.0 361 90.0
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 2.5e-186 655.6 360 86.9
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.2e-179 632.5 340 90.3
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 6.5e-179 630.9 402 77.9
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 3.3e-175 618.6 402 77.6
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 3.3e-175 618.6 334 89.8
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 9.7e-175 617.1 401 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 3.7e-174 615.1 402 71.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.0e-171 607.1 402 70.9
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.2e-171 605.9 402 70.1
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.0e-169 597.4 403 70.0
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.7e-166 588.6 403 68.7
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.0e-163 578.2 402 68.7
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.6e-161 573.2 401 66.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.7e-158 562.0 403 66.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 5.7e-151 538.1 286 89.9
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.8e-145 519.2 403 68.0
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 3.0e-139 499.2 419 63.5
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 6.2e-137 491.5 402 64.2
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 5.8e-127 458.4 259 84.9
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 6.6e-123 444.9 394 54.1
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 5.4e-117 425.2 395 53.2
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 3.3e-114 416.0 276 76.1
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.5e-103 380.6 219 84.0
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.5e-103 380.6 219 83.6
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.5e-103 380.6 229 79.5
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-102 377.5 219 82.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.4e-82 308.5 300 54.0
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 9.6e-82 308.1 160 92.5
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 7.2e-77 292.0 163 85.3
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 5.3e-56 222.6 116 91.4
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.7e-33 146.7 351 29.6
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 6.3e-33 146.0 351 27.6
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.4e-32 144.1 86 80.2
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.7e-17 93.6 47 91.5
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 2.1e-12 77.8 45 71.1
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.1e-12 77.8 72 56.9
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-12 76.6 316 23.1
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 7.5e-10 69.3 356 21.6


User provided reference genes

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