Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 3.5e-58 228.0 111 100.0
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 8.1e-39 163.7 91 86.8
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 3.1e-38 161.8 91 87.9
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 9.3e-35 150.2 91 80.2
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 7.9e-34 147.1 91 80.2
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 1.0e-33 146.7 90 80.0
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 3.9e-33 144.8 91 78.0
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 3.9e-33 144.8 91 76.9
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 6.7e-33 144.1 91 74.7
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 8.7e-33 143.7 91 75.8
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 1.5e-32 142.9 91 76.9
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 1.9e-32 142.5 91 73.6
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 1.9e-32 142.5 91 76.9
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 2.5e-32 142.1 91 76.9
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 2.5e-32 142.1 91 75.8
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 2.5e-32 142.1 91 75.8
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 2.5e-32 142.1 91 75.8
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 7.4e-32 140.6 91 76.9
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 9.6e-32 140.2 91 75.8
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.3e-31 139.8 91 74.7
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 1.3e-31 139.8 91 74.7
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.3e-31 139.8 91 73.6
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 2.1e-31 139.0 91 73.6
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 4.8e-31 137.9 91 73.6
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 6.2e-31 137.5 91 73.6
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 6.2e-31 137.5 91 70.3
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 6.2e-31 137.5 91 71.4
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 6.2e-31 137.5 91 71.4
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 8.1e-31 137.1 91 72.5
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 8.1e-31 137.1 91 72.5
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 8.1e-31 137.1 91 72.5
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 1.1e-30 136.7 91 72.5
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 1.1e-30 136.7 91 72.5
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 1.1e-30 136.7 91 72.5
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 1.1e-30 136.7 91 72.5
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.1e-30 136.7 91 72.5
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 1.4e-30 136.3 91 71.4
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 1.4e-30 136.3 91 71.4
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 1.4e-30 136.3 91 71.4
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.4e-30 136.3 91 71.4
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 1.4e-30 136.3 91 71.4
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 1.8e-30 136.0 91 71.4
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.8e-30 136.0 91 71.4
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 2.4e-30 135.6 91 72.5
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 2.4e-30 135.6 91 72.5
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 2.4e-30 135.6 91 72.5
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 2.4e-30 135.6 91 71.4
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 2.4e-30 135.6 91 73.6
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.1e-30 135.2 91 72.5
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 4.0e-30 134.8 91 70.3
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 4.0e-30 134.8 91 70.3
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 4.0e-30 134.8 91 70.3
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 4.0e-30 134.8 91 73.6
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 5.3e-30 134.4 91 70.3
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 5.3e-30 134.4 91 72.5
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 5.3e-30 134.4 91 70.3
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 5.3e-30 134.4 91 70.3
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.9e-30 134.0 91 70.3
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.9e-30 134.0 91 70.3
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 6.9e-30 134.0 94 70.2
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 6.9e-30 134.0 91 71.4
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 9.0e-30 133.7 91 69.2
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 9.0e-30 133.7 91 72.5
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 9.0e-30 133.7 91 70.3
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 9.0e-30 133.7 91 68.1
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.2e-29 133.3 91 70.3
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.2e-29 133.3 91 70.3
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.2e-29 133.3 91 70.3
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 1.5e-29 132.9 91 70.3
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.5e-29 132.9 91 69.2
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 2.0e-29 132.5 91 72.5
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 2.0e-29 132.5 91 71.4
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 2.6e-29 132.1 91 70.3
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 2.6e-29 132.1 91 70.3
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.6e-29 132.1 91 68.1
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 3.4e-29 131.7 94 71.3
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 3.4e-29 131.7 91 71.4
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 3.4e-29 131.7 91 71.4
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 5.8e-29 131.0 91 68.1
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 5.8e-29 131.0 91 71.4
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 5.8e-29 131.0 91 70.3
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 7.6e-29 130.6 91 70.3
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 7.6e-29 130.6 91 69.2
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 9.9e-29 130.2 91 68.1
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 9.9e-29 130.2 91 68.1
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.3e-28 129.8 91 68.1
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 1.3e-28 129.8 91 69.2
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.7e-28 129.4 91 69.2
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 1.7e-28 129.4 91 68.1
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 2.9e-28 128.6 91 69.2
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 2.9e-28 128.6 91 69.2
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.9e-28 128.6 91 65.9
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 3.8e-28 128.3 91 65.9
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 3.8e-28 128.3 91 68.1
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 4.9e-28 127.9 91 65.9
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 4.9e-28 127.9 91 67.0
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 4.9e-28 127.9 91 67.0
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 4.9e-28 127.9 91 67.0
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 6.4e-28 127.5 91 67.0
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 8.4e-28 127.1 91 65.9
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 1.1e-27 126.7 91 67.0
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 1.9e-27 125.9 91 65.9
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.4e-27 125.6 91 67.0
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 3.2e-27 125.2 91 65.9
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 3.2e-27 125.2 91 65.9
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 3.2e-27 125.2 91 65.9
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 4.2e-27 124.8 94 64.9
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 4.2e-27 124.8 91 65.9
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 4.2e-27 124.8 94 64.9
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 5.5e-27 124.4 91 63.7
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 5.5e-27 124.4 91 64.8
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 5.5e-27 124.4 91 64.8
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.2e-26 123.2 91 64.8
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 1.2e-26 123.2 91 64.8
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 1.6e-26 122.9 91 64.8
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 2.1e-26 122.5 91 63.7
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.7e-26 122.1 91 64.8
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 2.7e-26 122.1 91 63.7
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 2.7e-26 122.1 91 64.8
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 3.5e-26 121.7 91 63.7
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 3.5e-26 121.7 91 63.7
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 4.6e-26 121.3 91 64.8
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 6.0e-26 120.9 91 62.6
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 6.0e-26 120.9 91 63.7
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 1.0e-25 120.2 91 62.6
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 2.3e-25 119.0 91 62.6
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 3.0e-25 118.6 89 67.4
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 3.9e-25 118.2 121 52.9
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 5.1e-25 117.9 90 61.1
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.9e-24 115.9 82 70.7
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 2.5e-24 115.5 94 61.7
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 5.6e-24 114.4 90 57.8
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 7.4e-24 114.0 94 60.6
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 1.3e-23 113.2 110 53.6
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 1.3e-23 113.2 84 69.0
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 1.3e-23 113.2 77 74.0
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 1.3e-23 113.2 90 57.8
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 3.7e-23 111.7 91 58.2
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.2e-23 110.9 72 75.0
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.8e-22 109.4 72 73.6
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.8e-22 109.4 73 72.6
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 1.8e-22 109.4 72 72.2
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 4.0e-22 108.2 73 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 5.3e-22 107.8 94 54.3
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 5.3e-22 107.8 94 57.4
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 6.9e-22 107.5 91 60.4
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 2.6e-21 105.5 72 70.8
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 3.4e-21 105.1 94 55.3
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.9e-20 102.1 72 66.7
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 6.5e-20 100.9 101 55.4
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 8.4e-20 100.5 74 66.2
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 3.2e-19 98.6 88 58.0
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 9.3e-19 97.1 89 52.8
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 2.1e-18 95.9 71 63.4
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 1.1e-14 83.6 98 43.9
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 5.3e-14 81.3 74 56.8
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 1.7e-12 76.3 95 43.2
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 2.2e-12 75.9 77 54.5
Actinidia02180 Actinidia chinensis HOM05D003706 ORTHO05D004487 5.0e-12 74.7 49 73.5
Sopen08g026640 Solanum pennellii HOM05D003706 ORTHO05D004487 1.9e-11 72.8 49 71.4
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 5.5e-11 71.2 71 53.5
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 5.5e-11 71.2 71 53.5
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 7.2e-11 70.9 47 68.1
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 1.4e-09 66.6 71 50.7
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 1.8e-09 66.2 65 53.8
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 1.9e-08 62.8 119 37.8
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 5.7e-08 61.2 43 67.4


User provided reference genes

Program Settings