Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05650 Coffea canephora HOM05D000193 ORTHO05D033945 7.7e-79 297.0 140 100.0
Cc05_g06980 Coffea canephora HOM05D000193 ORTHO05D000402 2.2e-41 172.6 88 94.3
TPR.G21760 Trifolium pratense HOM05D000193 ORTHO05D000402 6.9e-19 97.8 86 61.6
Lj3g0013910 Lotus japonicus HOM05D000193 ORTHO05D000402 2.0e-18 96.3 83 57.8
Medtr6g007340 Medicago truncatula HOM05D000193 ORTHO05D000402 1.3e-17 93.6 71 66.2
Medtr7g446340 Medicago truncatula HOM05D000193 ORTHO05D000402 1.3e-17 93.6 71 66.2
CiPaw.04G124800 Carya illinoinensis HOM05D000193 ORTHO05D000402 6.5e-17 91.3 71 64.8
Oeu029920.1 Olea europaea HOM05D000193 ORTHO05D000402 8.4e-17 90.9 73 67.1
Psat7g166480 Pisum sativum HOM05D000193 ORTHO05D000402 1.1e-16 90.5 71 64.8
Haze_13139 Corylus avellana HOM05D000193 ORTHO05D000402 1.9e-16 89.7 71 66.2
Sopen12g005300 Solanum pennellii HOM05D000193 ORTHO05D000402 1.9e-16 89.7 71 66.2
Cfa014586 Carpinus fangiana HOM05D000193 ORTHO05D000402 3.2e-16 89.0 71 66.2
Glyma.12G110600 Glycine max HOM05D000193 ORTHO05D000402 3.2e-16 89.0 71 62.0
arahy.Tifrunner.gnm1.ann1.G3WUMZ Arachis hypogaea HOM05D000193 ORTHO05D000402 4.2e-16 88.6 63 65.1
arahy.Tifrunner.gnm1.ann1.K6PTBY Arachis hypogaea HOM05D000193 ORTHO05D000402 4.2e-16 88.6 63 65.1
CANSAT78G2466 Cannabis sativa HOM05D000193 ORTHO05D000402 5.5e-16 88.2 71 63.4
PGSC0003DMG400007865 Solanum tuberosum HOM05D000193 ORTHO05D000402 5.5e-16 88.2 71 66.2
Ca_26669_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000402 7.1e-16 87.8 71 63.4
Solyc12g010690.2 Solanum lycopersicum HOM05D000193 ORTHO05D000402 7.1e-16 87.8 71 67.6
Dinv12918 Davidia involucrata HOM05D000193 ORTHO05D000402 9.3e-16 87.4 71 62.0
Lsat_1_v5_gn_3_39141 Lactuca sativa HOM05D000193 ORTHO05D000402 9.3e-16 87.4 68 64.7
Cc05_g06930 Coffea canephora HOM05D000193 ORTHO05D000402 2.1e-15 86.3 62 71.0
HanXRQChr17g0542731 Helianthus annuus HOM05D000193 ORTHO05D000402 4.6e-15 85.1 74 59.5
Prupe.3G156900 Prunus persica HOM05D000193 ORTHO05D000402 1.0e-14 84.0 70 62.9
HanXRQChr17g0564401 Helianthus annuus HOM05D000193 ORTHO05D000402 1.3e-14 83.6 62 69.4
Gohir.A03G157600 Gossypium hirsutum HOM05D000193 ORTHO05D000402 1.8e-14 83.2 68 60.3
ECA246G2548 Erigeron canadensis HOM05D000193 ORTHO05D000402 2.3e-14 82.8 74 59.5
Duzib248G0874 Durio zibethinus HOM05D000193 ORTHO05D000402 3.0e-14 82.4 72 61.1
DCAR_012997 Daucus carota HOM05D000193 ORTHO05D000402 3.9e-14 82.0 75 62.7
TWI36G1553 Tripterygium wilfordii HOM05D000193 ORTHO05D000402 3.9e-14 82.0 63 61.9
COL.COLO4_06979 Corchorus olitorius HOM05D000193 ORTHO05D000402 5.1e-14 81.6 71 60.6
arahy.Tifrunner.gnm1.ann1.RJG4HY Arachis hypogaea HOM05D000193 ORTHO05D000402 1.1e-13 80.5 74 59.5
CSS0018837 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000402 1.1e-13 80.5 71 60.6
CSS0028476 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000402 1.1e-13 80.5 71 60.6
Lalb_Chr01g0005341 Lupinus albus HOM05D000193 ORTHO05D000402 1.1e-13 80.5 71 59.2
Gohir.D02G180800 Gossypium hirsutum HOM05D000193 ORTHO05D000402 1.5e-13 80.1 68 58.8
Gorai.005G202400 Gossypium raimondii HOM05D000193 ORTHO05D000402 1.5e-13 80.1 68 58.8
QL08p038265 Quercus lobata HOM05D000193 ORTHO05D000402 1.5e-13 80.1 63 61.9
arahy.Tifrunner.gnm1.ann1.A91ASK Arachis hypogaea HOM05D000193 ORTHO05D000402 2.5e-13 79.3 74 59.5
Glyma.12G203200 Glycine max HOM05D000193 ORTHO05D000402 2.5e-13 79.3 63 63.5
SGA_v2.0_scaffold109G31109 Striga asiatica HOM05D000193 ORTHO05D000402 2.5e-13 79.3 65 64.6
Duzib132G0864 Durio zibethinus HOM05D000193 ORTHO05D000402 3.3e-13 79.0 69 60.9
Lalb_Chr03g0029311 Lupinus albus HOM05D000193 ORTHO05D000402 5.7e-13 78.2 71 56.3
Lj3g0023976 Lotus japonicus HOM05D000193 ORTHO05D000402 9.6e-13 77.4 71 57.7
Phvul.005G105000 Phaseolus vulgaris HOM05D000193 ORTHO05D000402 9.6e-13 77.4 64 60.9
Thecc.02G177100 Theobroma cacao HOM05D000193 ORTHO05D000402 1.3e-12 77.0 73 56.2
CSS0011955 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000402 1.6e-12 76.6 64 60.9
CSS0042235 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000402 1.6e-12 76.6 64 60.9
MD09G1251800 Malus domestica HOM05D000193 ORTHO05D033945 1.6e-12 76.6 77 57.1
Lj1A727T52 Lonicera japonica HOM05D000193 ORTHO05D000402 2.8e-12 75.9 76 53.9
MD17G1244000 Malus domestica HOM05D000193 ORTHO05D000402 2.8e-12 75.9 74 56.8
Gohir.A04G104600 Gossypium hirsutum HOM05D000193 ORTHO05D000402 4.8e-12 75.1 69 59.4
TAR629G2637 Trochodendron aralioides HOM05D000193 ORTHO05D000402 4.8e-12 75.1 61 60.7
VMungo1127G1331 Vigna mungo HOM05D000193 ORTHO05D000402 4.8e-12 75.1 71 53.5
Gohir.D04G144400 Gossypium hirsutum HOM05D000193 ORTHO05D000402 6.3e-12 74.7 69 59.4
Gorai.012G130400 Gossypium raimondii HOM05D000193 ORTHO05D000402 6.3e-12 74.7 69 59.4
CAN.G486.10 Capsicum annuum HOM05D000193 ORTHO05D000402 8.2e-12 74.3 77 55.8
Glyma.13G298500 Glycine max HOM05D000193 ORTHO05D000402 8.2e-12 74.3 82 48.8
Hma1.2p1_1201F.1_g266750 Hydrangea macrophylla HOM05D000193 ORTHO05D000402 8.2e-12 74.3 63 65.1
Nitab4.5_0002575g0010 Nicotiana tabacum HOM05D000193 ORTHO05D000402 8.2e-12 74.3 73 56.2
Nitab4.5_0003022g0080 Nicotiana tabacum HOM05D000193 ORTHO05D000402 8.2e-12 74.3 73 56.2
Nn1g04006 Nelumbo nucifera HOM05D000193 ORTHO05D000402 1.1e-11 73.9 65 56.9
ClCG02G017540 Citrullus lanatus HOM05D000193 ORTHO05D000402 1.4e-11 73.6 64 56.2
GSVIVG01030384001 Vitis vinifera HOM05D000193 ORTHO05D000402 1.4e-11 73.6 71 54.9
FAN11G2214 Fragaria x ananassa HOM05D000193 ORTHO05D000402 1.8e-11 73.2 80 53.8
FAN16G2404 Fragaria x ananassa HOM05D000193 ORTHO05D000402 1.8e-11 73.2 80 53.8
VMungo1080G1880 Vigna mungo HOM05D000193 ORTHO05D000402 1.8e-11 73.2 63 58.7
Lsat_1_v5_gn_8_131981 Lactuca sativa HOM05D000193 ORTHO05D000402 2.4e-11 72.8 57 64.9
Peaxi162Scf02133g00017 Petunia axillaris HOM05D000193 ORTHO05D000402 2.4e-11 72.8 58 65.5
vmacro12282 Vaccinium macrocarpon HOM05D000193 ORTHO05D000402 2.4e-11 72.8 77 54.5
CSS0006827 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000402 3.1e-11 72.4 71 53.5
CSS0025738 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000402 3.1e-11 72.4 71 53.5
TWI75G1080 Tripterygium wilfordii HOM05D000193 ORTHO05D000402 5.3e-11 71.6 72 51.4
Manes.13G148000 Manihot esculenta HOM05D000193 ORTHO05D000402 6.9e-11 71.2 71 57.7
FAN21G1955 Fragaria x ananassa HOM05D000193 ORTHO05D000402 9.0e-11 70.9 80 52.5
Prupe.4G042700 Prunus persica HOM05D000193 ORTHO05D000402 9.0e-11 70.9 80 47.5
Eucgr.K00963 Eucalyptus grandis HOM05D000193 ORTHO05D000402 1.2e-10 70.5 73 53.4
Phvul.011G118500 Phaseolus vulgaris HOM05D000193 ORTHO05D000402 1.2e-10 70.5 71 54.9
MSTRG.12311 Avicennia marina HOM05D000193 ORTHO05D000402 2.0e-10 69.7 62 59.7
Cpa.g.sc34.135 Carica papaya HOM05D000193 ORTHO05D000402 2.0e-10 69.7 72 51.4
RcHm_v2.0_Chr5g0007771 Rosa chinensis HOM05D000193 ORTHO05D000402 2.0e-10 69.7 80 47.5
FAN25G0517 Fragaria x ananassa HOM05D000193 ORTHO05D000402 2.6e-10 69.3 80 51.2
Sed0003338 Sechium edule HOM05D000193 ORTHO05D000402 2.6e-10 69.3 63 54.0
Rhsim06G0146400 Rhododendron simsii HOM05D000193 ORTHO05D000402 3.4e-10 68.9 73 53.4
Lalb_Chr18g0059751 Lupinus albus HOM05D000193 ORTHO05D000402 4.5e-10 68.6 72 50.0
Migut.H01068 Erythranthe guttata HOM05D000193 ORTHO05D000402 5.9e-10 68.2 78 52.6
Actinidia11047 Actinidia chinensis HOM05D000193 ORTHO05D000402 7.6e-10 67.8 55 63.6
CiPaw.09G055400 Carya illinoinensis HOM05D000193 ORTHO05D000402 7.6e-10 67.8 76 50.0
Aqoxy1G02570 Aquilegia oxysepala HOM05D000193 ORTHO05D000402 1.3e-09 67.0 75 49.3
PGR142G1602 Punica granatum HOM05D000193 ORTHO05D000402 1.3e-09 67.0 55 67.3
Sabra13G0114500 Salix brachista HOM05D000193 ORTHO05D000402 1.3e-09 67.0 71 52.1
CsaV3_6G013040 Cucumis sativus L. HOM05D000193 ORTHO05D000402 1.7e-09 66.6 71 53.5
Actinidia09865 Actinidia chinensis HOM05D000193 ORTHO05D000402 3.8e-09 65.5 73 58.9
MBI17_g03753_MAGBIO Magnolia biondii HOM05D000193 ORTHO05D000402 6.5e-09 64.7 71 52.1
PGR042G1929 Punica granatum HOM05D000193 ORTHO05D000402 6.5e-09 64.7 80 47.5
RcHm_v2.0_Chr7g0218421 Rosa chinensis HOM05D000193 ORTHO05D000402 6.5e-09 64.7 68 48.5
SalBow1G1416 Salvia bowleyana HOM05D000193 ORTHO05D000402 1.4e-08 63.5 80 52.5
TAR627G0752 Trochodendron aralioides HOM05D000193 ORTHO05D000402 1.9e-08 63.2 71 52.1
Eucgr.K00967 Eucalyptus grandis HOM05D000193 ORTHO05D000402 2.5e-08 62.8 53 58.5
VMungo0540G0112 Vigna mungo HOM05D000193 ORTHO05D000402 2.5e-08 62.8 61 54.1
Cfa000407 Carpinus fangiana HOM05D000193 ORTHO05D000402 4.2e-08 62.0 65 46.2
Aqoxy4G01172 Aquilegia oxysepala HOM05D000193 ORTHO05D000402 5.5e-08 61.6 59 54.2
Aa31LG8G17710 Aethionema arabicum HOM05D000193 ORTHO05D000402 7.2e-08 61.2 71 50.7
Manes.12G087600 Manihot esculenta HOM05D000193 ORTHO05D000402 7.2e-08 61.2 86 43.0
EL10Ac8g20334 Beta vulgaris HOM05D000193 ORTHO05D000402 9.3e-08 60.8 54 61.1
MELO3C013591.2 Cucumis melo HOM05D000193 ORTHO05D000402 9.3e-08 60.8 71 50.7
Haze_06520 Corylus avellana HOM05D000193 ORTHO05D000402 1.2e-07 60.5 65 46.2
Ca_00323_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000402 1.6e-07 60.1 71 46.5
arahy.Tifrunner.gnm1.ann1.351FAU Arachis hypogaea HOM05D000193 ORTHO05D000402 2.1e-07 59.7 63 46.0
CARHR111450 Cardamine hirsuta HOM05D000193 ORTHO05D000402 2.1e-07 59.7 62 54.8
Cc05_g06860 Coffea canephora HOM05D000193 ORTHO05D000402 2.1e-07 59.7 46 60.9
CSS0044174 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D033945 2.7e-07 59.3 67 49.3
AUR62037334 Chenopodium quinoa HOM05D000193 ORTHO05D000402 2.7e-07 59.3 68 44.1
arahy.Tifrunner.gnm1.ann1.8K3X8B Arachis hypogaea HOM05D000193 ORTHO05D000402 3.6e-07 58.9 87 41.4
TPR.G29046 Trifolium pratense HOM05D000193 ORTHO05D000402 3.6e-07 58.9 84 45.2
Lalb_Chr15g0089911 Lupinus albus HOM05D000193 ORTHO05D000402 4.6e-07 58.5 71 49.3
AT2G20780 Arabidopsis thaliana HOM05D000193 ORTHO05D000402 6.1e-07 58.2 66 51.5
Eucgr.K00968 Eucalyptus grandis HOM05D000193 ORTHO05D000402 6.1e-07 58.2 53 58.5
Ah.01g015270 Amaranthus hybridus HOM05D000193 ORTHO05D000402 7.9e-07 57.8 60 46.7
PGR142G3583 Punica granatum HOM05D000193 ORTHO05D000402 7.9e-07 57.8 71 49.3
CSS0018422 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000402 1.0e-06 57.4 65 49.2
AL3G53890 Arabidopsis lyrata HOM05D000193 ORTHO05D000402 1.3e-06 57.0 66 51.5
Zm00001eb066030 Zea mays HOM05D000193 ORTHO05D000402 1.8e-06 56.6 94 43.6
Hund07976 Selenicereus undatus HOM05D000193 ORTHO05D000402 2.3e-06 56.2 71 49.3
MD05G1318100 Malus domestica HOM05D000193 ORTHO05D000402 3.9e-06 55.5 79 41.8
QL05p039286 Quercus lobata HOM05D000193 ORTHO05D000402 5.1e-06 55.1 71 42.3
Dinv07529 Davidia involucrata HOM05D000193 ORTHO05D000402 6.7e-06 54.7 54 53.7
Hund21249 Selenicereus undatus HOM05D000193 ORTHO05D000402 6.7e-06 54.7 71 49.3
AUR62016970 Chenopodium quinoa HOM05D000193 ORTHO05D000402 8.7e-06 54.3 52 55.8
Medtr2g013310 Medicago truncatula HOM05D000193 ORTHO05D000402 8.7e-06 54.3 71 43.7


User provided reference genes

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