Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 3.2e-30 134.4 67 100.0
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 1.0e-20 102.8 62 85.5
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.3e-20 102.4 62 83.9
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 2.3e-20 101.7 62 87.1
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 3.0e-20 101.3 62 83.9
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 3.9e-20 100.9 62 83.9
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 5.1e-20 100.5 62 82.3
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 6.7e-20 100.1 62 82.3
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 6.7e-20 100.1 62 82.3
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 8.7e-20 99.8 62 80.6
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 8.7e-20 99.8 59 84.7
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 8.7e-20 99.8 62 82.3
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 8.7e-20 99.8 62 82.3
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 8.7e-20 99.8 62 82.3
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 1.1e-19 99.4 62 80.6
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 1.1e-19 99.4 62 80.6
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.5e-19 99.0 62 80.6
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 1.9e-19 98.6 62 79.0
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 1.9e-19 98.6 62 80.6
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.9e-19 98.6 62 80.6
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 2.5e-19 98.2 65 75.4
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 2.5e-19 98.2 62 82.3
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 2.5e-19 98.2 62 80.6
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 3.3e-19 97.8 62 80.6
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 3.3e-19 97.8 62 79.0
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 4.3e-19 97.4 62 80.6
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.3e-19 97.4 62 79.0
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.3e-19 97.4 62 79.0
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.3e-19 97.4 62 79.0
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 5.6e-19 97.1 62 77.4
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 5.6e-19 97.1 62 80.6
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 5.6e-19 97.1 62 80.6
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 7.4e-19 96.7 58 81.0
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 7.4e-19 96.7 62 77.4
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 9.6e-19 96.3 62 77.4
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 9.6e-19 96.3 62 77.4
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 1.3e-18 95.9 62 75.8
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 1.6e-18 95.5 62 77.4
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 1.6e-18 95.5 62 77.4
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 1.6e-18 95.5 62 77.4
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 1.6e-18 95.5 62 77.4
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 2.1e-18 95.1 62 77.4
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 2.1e-18 95.1 62 75.8
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 2.8e-18 94.7 62 77.4
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 3.6e-18 94.4 62 75.8
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 3.6e-18 94.4 62 75.8
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 3.6e-18 94.4 62 77.4
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 3.6e-18 94.4 62 77.4
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 4.8e-18 94.0 62 75.8
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 6.2e-18 93.6 58 77.6
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 6.2e-18 93.6 58 77.6
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 6.2e-18 93.6 58 77.6
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 6.2e-18 93.6 62 75.8
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 6.2e-18 93.6 62 74.2
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 8.1e-18 93.2 62 75.8
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 8.1e-18 93.2 62 74.2
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 8.1e-18 93.2 58 79.3
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 8.1e-18 93.2 62 75.8
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 8.1e-18 93.2 62 75.8
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 8.1e-18 93.2 62 75.8
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 1.1e-17 92.8 62 75.8
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.1e-17 92.8 62 75.8
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.1e-17 92.8 62 75.8
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 1.1e-17 92.8 62 77.4
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 1.8e-17 92.0 62 74.2
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 1.8e-17 92.0 62 74.2
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 1.8e-17 92.0 62 71.0
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 3.1e-17 91.3 71 70.4
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.1e-17 91.3 62 74.2
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 4.0e-17 90.9 58 79.3
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 4.0e-17 90.9 58 79.3
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 5.3e-17 90.5 62 72.6
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 1.2e-16 89.4 62 71.0
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 1.5e-16 89.0 62 71.0
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 1.5e-16 89.0 82 61.0
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 3.4e-16 87.8 62 71.0
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 4.5e-16 87.4 62 71.0
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 4.5e-16 87.4 59 72.9
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 5.8e-16 87.0 62 69.4
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 2.2e-15 85.1 62 69.4
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 2.9e-15 84.7 80 61.2
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 8.4e-15 83.2 62 66.1
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 8.4e-15 83.2 62 62.9
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 8.4e-15 83.2 62 62.9
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 1.4e-14 82.4 62 64.5
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 1.4e-14 82.4 62 64.5
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 1.4e-14 82.4 62 64.5
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 1.4e-14 82.4 62 64.5
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 1.4e-14 82.4 62 64.5
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 1.4e-14 82.4 62 64.5
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.4e-14 82.4 62 64.5
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 2.4e-14 81.6 62 64.5
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 4.2e-14 80.9 62 62.9
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 5.5e-14 80.5 58 65.5
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 7.1e-14 80.1 62 62.9
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.2e-13 79.3 62 62.9
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 2.7e-13 78.2 62 62.9
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.8e-12 75.5 53 67.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-11 72.8 51 68.6
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 2.5e-11 71.6 43 81.4
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 3.3e-11 71.2 41 82.9
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 1.3e-10 69.3 62 54.8
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 2.1e-10 68.6 62 62.9
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 2.1e-10 68.6 59 66.1
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 4.8e-10 67.4 60 58.3
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 4.8e-10 67.4 46 71.7
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 4.8e-10 67.4 47 68.1
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 1.4e-09 65.9 62 59.7
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 3.4e-08 61.2 58 50.0
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 1.0e-07 59.7 62 50.0
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 6.5e-07 57.0 41 63.4
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 4.2e-06 54.3 62 38.7
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 9.3e-06 53.1 62 41.9


User provided reference genes

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