Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05500 Coffea canephora HOM05D000055 ORTHO05D154249 1.6e-58 229.2 111 100.0
unitig_747.g22000 Utricularia gibba HOM05D000055 ORTHO05D003892 2.8e-15 85.5 87 55.2
Eucgr.B02491 Eucalyptus grandis HOM05D000055 ORTHO05D003892 3.7e-15 85.1 91 52.7
Cc01_g11240 Coffea canephora HOM05D000055 ORTHO05D003892 6.3e-15 84.3 91 52.7
TAR633G0710 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.4e-14 83.2 91 50.5
Actinidia03736 Actinidia chinensis HOM05D000055 ORTHO05D003892 1.8e-14 82.8 87 52.9
Rhsim01G0217700 Rhododendron simsii HOM05D000055 ORTHO05D003892 1.8e-14 82.8 93 50.5
Manes.11G144200 Manihot esculenta HOM05D000055 ORTHO05D003892 2.4e-14 82.4 91 51.6
RcHm_v2.0_Chr5g0059631 Rosa chinensis HOM05D000055 ORTHO05D003892 2.4e-14 82.4 91 50.5
vmacro14443 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 2.4e-14 82.4 91 49.5
Aqoxy1G01251 Aquilegia oxysepala HOM05D000055 ORTHO05D003892 3.1e-14 82.0 91 50.5
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 3.1e-14 82.0 94 50.0
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 3.1e-14 82.0 94 50.0
Nitab4.5_0000181g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 3.1e-14 82.0 94 50.0
Nitab4.5_0011503g0020 Nicotiana tabacum HOM05D000055 ORTHO05D003892 3.1e-14 82.0 94 50.0
Dinv32758 Davidia involucrata HOM05D000055 ORTHO05D003892 4.1e-14 81.6 91 50.5
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 4.1e-14 81.6 94 50.0
Oeu002458.1 Olea europaea HOM05D000055 ORTHO05D003892 4.1e-14 81.6 87 50.6
Atru.chr3.3642 Acer truncatum HOM05D000055 ORTHO05D003892 5.3e-14 81.3 91 50.5
FAN11G2098 Fragaria x ananassa HOM05D000055 ORTHO05D003892 5.3e-14 81.3 91 50.5
FAN21G3773 Fragaria x ananassa HOM05D000055 ORTHO05D003892 5.3e-14 81.3 91 50.5
FAN25G0102 Fragaria x ananassa HOM05D000055 ORTHO05D003892 5.3e-14 81.3 91 50.5
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 5.3e-14 81.3 91 50.5
vmacro03192 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 5.3e-14 81.3 93 51.6
Cfa011330 Carpinus fangiana HOM05D000055 ORTHO05D003892 6.9e-14 80.9 91 50.5
DCAR_015541 Daucus carota HOM05D000055 ORTHO05D003892 6.9e-14 80.9 91 49.5
Duzib150G1261 Durio zibethinus HOM05D000055 ORTHO05D003892 6.9e-14 80.9 91 48.4
Cpa.g.sc216.16 Carica papaya HOM05D000055 ORTHO05D003892 9.0e-14 80.5 87 50.6
Potri.009G012900 Populus trichocarpa HOM05D000055 ORTHO05D003892 9.0e-14 80.5 91 50.5
FAN16G0066 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.2e-13 80.1 91 49.5
Gohir.A08G008700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.2e-13 80.1 91 48.4
Lj2A1030G59 Lonicera japonica HOM05D000055 ORTHO05D003892 1.2e-13 80.1 91 50.5
MBI07_g19318_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 1.2e-13 80.1 87 50.6
Thecc.09G257000 Theobroma cacao HOM05D000055 ORTHO05D003892 1.2e-13 80.1 91 48.4
CSS0032288 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D003892 1.5e-13 79.7 94 50.0
Nn2g10768 Nelumbo nucifera HOM05D000055 ORTHO05D003892 1.5e-13 79.7 92 47.8
Peaxi162Scf00270g00098 Petunia axillaris HOM05D000055 ORTHO05D003892 1.5e-13 79.7 91 48.4
SGA_v2.0_scaffold97G29216 Striga asiatica HOM05D000055 ORTHO05D003892 1.5e-13 79.7 87 51.7
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 1.5e-13 79.7 91 49.5
TAR636G2561 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.5e-13 79.7 91 48.4
HPP92_005398 Vanilla planifolia HOM05D000055 ORTHO05D003892 1.5e-13 79.7 91 49.5
CiPaw.13G112000 Carya illinoinensis HOM05D000055 ORTHO05D003892 2.0e-13 79.3 91 49.5
ClCG02G021100 Citrullus lanatus HOM05D000055 ORTHO05D003892 2.6e-13 79.0 91 48.4
Haze_23862 Corylus avellana HOM05D000055 ORTHO05D003892 2.6e-13 79.0 91 49.5
Gohir.D08G018700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 2.6e-13 79.0 91 47.3
Gorai.004G013200 Gossypium raimondii HOM05D000055 ORTHO05D003892 2.6e-13 79.0 91 47.3
Sabra09G0008400 Salix brachista HOM05D000055 ORTHO05D003892 2.6e-13 79.0 85 51.8
HPP92_012805 Vanilla planifolia HOM05D000055 ORTHO05D003892 2.6e-13 79.0 91 48.4
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 2.6e-13 79.0 91 49.5
MELO3C025767.2 Cucumis melo HOM05D000055 ORTHO05D003892 3.4e-13 78.6 91 47.3
CsaV3_6G013850 Cucumis sativus L. HOM05D000055 ORTHO05D003892 3.4e-13 78.6 91 47.3
ECA248G2155 Erigeron canadensis HOM05D000055 ORTHO05D003892 3.4e-13 78.6 94 47.9
Hma1.2p1_1031F.1_g249950 Hydrangea macrophylla HOM05D000055 ORTHO05D003892 3.4e-13 78.6 91 48.4
MD03G1116200 Malus domestica HOM05D000055 ORTHO05D003892 3.4e-13 78.6 97 46.4
QL01p022404 Quercus lobata HOM05D000055 ORTHO05D003892 3.4e-13 78.6 91 49.5
SalBow3G0288 Salvia bowleyana HOM05D000055 ORTHO05D003892 3.4e-13 78.6 91 48.4
FvH4_3g32550 Fragaria vesca HOM05D000055 ORTHO05D003892 4.5e-13 78.2 91 49.5
Gohir.D07G122200 Gossypium hirsutum HOM05D000055 ORTHO05D003892 4.5e-13 78.2 91 48.4
Gorai.001G132000 Gossypium raimondii HOM05D000055 ORTHO05D003892 4.5e-13 78.2 91 48.4
Sed0006682 Sechium edule HOM05D000614 ORTHO05D003892 4.5e-13 78.2 91 48.4
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 4.5e-13 78.2 91 48.4
MSTRG.17813 Avicennia marina HOM05D000055 ORTHO05D003892 5.9e-13 77.8 91 48.4
Nitab4.5_0000650g0130 Nicotiana tabacum HOM05D000055 ORTHO05D003892 5.9e-13 77.8 94 46.8
Rhsim13G0093800 Rhododendron simsii HOM05D000055 ORTHO05D003892 5.9e-13 77.8 91 49.5
Sopen11g028030 Solanum pennellii HOM05D000055 ORTHO05D003892 5.9e-13 77.8 94 46.8
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 7.6e-13 77.4 94 46.8
Nitab4.5_0003701g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 7.6e-13 77.4 91 47.3
SEGI_17972 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 7.6e-13 77.4 98 44.9
PGSC0003DMG400008108 Solanum tuberosum HOM05D000055 ORTHO05D003892 7.6e-13 77.4 94 46.8
MSTRG.21130 Avicennia marina HOM05D000055 ORTHO05D003892 1.0e-12 77.0 87 50.6
Ciclev10028546m.g Citrus clementina HOM05D000055 ORTHO05D003892 1.0e-12 77.0 91 50.5
Gohir.A07G117900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.0e-12 77.0 87 49.4
PGR102G0854 Punica granatum HOM05D000055 ORTHO05D003892 1.0e-12 77.0 100 45.0
CANSAT54G2619 Cannabis sativa HOM05D000055 ORTHO05D003892 1.3e-12 76.6 91 48.4
Gohir.A05G073900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.7e-12 76.3 91 46.2
CAN.G631.17 Capsicum annuum HOM05D000055 ORTHO05D003892 2.2e-12 75.9 94 45.7
Duzib168G0484 Durio zibethinus HOM05D000055 ORTHO05D003892 2.2e-12 75.9 91 46.2
Lj1C190G12 Lonicera japonica HOM05D000055 ORTHO05D003892 2.2e-12 75.9 91 48.4
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 2.2e-12 75.9 91 47.3
Gohir.D05G076800 Gossypium hirsutum HOM05D000055 ORTHO05D003892 2.9e-12 75.5 91 46.2
Gorai.009G078200 Gossypium raimondii HOM05D000055 ORTHO05D003892 2.9e-12 75.5 91 46.2
PSO339G3375 Papaver somniferum HOM05D000055 ORTHO05D003892 2.9e-12 75.5 91 46.2
PSO384G4136 Papaver somniferum HOM05D000055 ORTHO05D003892 2.9e-12 75.5 91 46.2
Prupe.6G100200 Prunus persica HOM05D000055 ORTHO05D003892 2.9e-12 75.5 87 48.3
SalBow3G2078 Salvia bowleyana HOM05D000055 ORTHO05D003892 2.9e-12 75.5 87 48.3
Aa31LG1G12540 Aethionema arabicum HOM05D000055 ORTHO05D003892 3.8e-12 75.1 91 46.2
ATR0115G016 Amborella trichopoda HOM05D000055 ORTHO05D003892 3.8e-12 75.1 95 44.2
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 3.8e-12 75.1 91 47.3
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 3.8e-12 75.1 94 45.7
CiPaw.14G079900 Carya illinoinensis HOM05D000055 ORTHO05D003892 5.0e-12 74.7 91 48.4
CDE07G1595 Ceratophyllum demersum HOM05D000055 ORTHO05D003892 5.0e-12 74.7 91 45.1
Thhalv10002549m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 5.0e-12 74.7 100 43.0
Glyma.13G326900 Glycine max HOM05D000055 ORTHO05D003892 5.0e-12 74.7 91 47.3
Thhalv10013666m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 6.5e-12 74.3 94 46.8
Lalb_Chr22g0350221 Lupinus albus HOM05D000055 ORTHO05D003892 6.5e-12 74.3 91 48.4
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 6.5e-12 74.3 91 46.2
PSO063G7525 Papaver somniferum HOM05D000055 ORTHO05D003892 6.5e-12 74.3 94 45.7
PSO339G0350 Papaver somniferum HOM05D000055 ORTHO05D003892 6.5e-12 74.3 94 45.7
THA.LOC104799499 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 6.5e-12 74.3 91 45.1
MD11G1134400 Malus domestica HOM05D000055 ORTHO05D003892 8.5e-12 73.9 91 46.2
AL8G37140 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 1.1e-11 73.6 92 45.7
AT5G60550 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 1.1e-11 73.6 92 45.7
BcaB08g36351 Brassica carinata HOM05D000055 ORTHO05D003892 1.1e-11 73.6 88 46.6
BcaC04g19713 Brassica carinata HOM05D000055 ORTHO05D003892 1.1e-11 73.6 88 46.6
A10p17740 Brassica napus HOM05D000055 ORTHO05D003892 1.1e-11 73.6 88 46.6
C09p53200 Brassica napus HOM05D000055 ORTHO05D003892 1.1e-11 73.6 88 46.6
BolC9t58195H Brassica oleracea HOM05D000055 ORTHO05D003892 1.1e-11 73.6 88 46.6
BraA10t43852Z Brassica rapa HOM05D000055 ORTHO05D003892 1.1e-11 73.6 88 46.6
Carub.0008s2124 Capsella rubella HOM05D000055 ORTHO05D003892 1.1e-11 73.6 92 45.7
CARHR274210 Cardamine hirsuta HOM05D000055 ORTHO05D003892 1.1e-11 73.6 92 45.7
Lalb_Chr01g0004251 Lupinus albus HOM05D000055 ORTHO05D003892 1.1e-11 73.6 94 45.7
Sp6g22120 Schrenkiella parvula HOM05D000055 ORTHO05D003892 1.1e-11 73.6 92 45.7
arahy.Tifrunner.gnm1.ann1.E1CD9Y Arachis hypogaea HOM05D000055 ORTHO05D003892 1.9e-11 72.8 91 46.2
arahy.Tifrunner.gnm1.ann1.E5GBGH Arachis hypogaea HOM05D000055 ORTHO05D003892 1.9e-11 72.8 91 46.2
BcaB05g22653 Brassica carinata HOM05D000055 ORTHO05D003892 1.9e-11 72.8 92 44.6
BcaC03g13960 Brassica carinata HOM05D000055 ORTHO05D003892 1.9e-11 72.8 92 44.6
C02p11590 Brassica napus HOM05D000055 ORTHO05D003892 1.9e-11 72.8 92 44.6
BolC2t07246H Brassica oleracea HOM05D000055 ORTHO05D003892 1.9e-11 72.8 92 44.6
BraA02t05716Z Brassica rapa HOM05D000055 ORTHO05D003892 1.9e-11 72.8 92 44.6
DCAR_006057 Daucus carota HOM05D000055 ORTHO05D003892 1.9e-11 72.8 91 46.2
THA.LOC104810850 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 1.9e-11 72.8 91 44.0
Actinidia07130 Actinidia chinensis HOM05D000055 ORTHO05D003892 2.5e-11 72.4 94 46.8
Lj3g0014873 Lotus japonicus HOM05D000055 ORTHO05D003892 2.5e-11 72.4 91 46.2
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 2.5e-11 72.4 91 46.2
AL5G23810 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 3.2e-11 72.0 91 45.1
AT3G45240 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 3.2e-11 72.0 91 45.1
CARHR150700 Cardamine hirsuta HOM05D000055 ORTHO05D003892 3.2e-11 72.0 91 44.0
Manes.04G022100 Manihot esculenta HOM05D000055 ORTHO05D003892 3.2e-11 72.0 91 47.3
Sabra04G0142300 Salix brachista HOM05D000055 ORTHO05D003892 3.2e-11 72.0 108 40.7
Sp5g16060 Schrenkiella parvula HOM05D000055 ORTHO05D003892 3.2e-11 72.0 91 44.0
HPP92_020313 Vanilla planifolia HOM05D010659 ORTHO05D003892 4.2e-11 71.6 91 44.0
Os03g0711300 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D003892 5.5e-11 71.2 101 40.6
Zm00001eb075500 Zea mays HOM05D000055 ORTHO05D003892 5.5e-11 71.2 96 43.8
Zm00001eb427480 Zea mays HOM05D000055 ORTHO05D003892 5.5e-11 71.2 96 43.8
Lalb_Chr19g0137341 Lupinus albus HOM05D000055 ORTHO05D003892 7.2e-11 70.9 91 45.1
VMungo1080G1375 Vigna mungo HOM05D000055 ORTHO05D003892 7.2e-11 70.9 91 46.2
MBI19_g17414_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 9.4e-11 70.5 96 42.7
Phvul.005G135922 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 1.6e-10 69.7 91 45.1
Aa31LG4G14560 Aethionema arabicum HOM05D000055 ORTHO05D003892 2.1e-10 69.3 91 42.9
Ah.08g216770 Amaranthus hybridus HOM05D000055 ORTHO05D003892 2.7e-10 68.9 94 44.7
EL10Ac7g16406 Beta vulgaris HOM05D000055 ORTHO05D003892 2.7e-10 68.9 94 44.7
Duzib106G1552 Durio zibethinus HOM05D000055 ORTHO05D003892 3.6e-10 68.6 98 40.8
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 3.6e-10 68.6 91 45.1
Thecc.10G171700 Theobroma cacao HOM05D000055 ORTHO05D003892 3.6e-10 68.6 98 40.8
Carub.0005s1102 Capsella rubella HOM05D000055 ORTHO05D003892 4.6e-10 68.2 87 44.8
Migut.O00632 Erythranthe guttata HOM05D000055 ORTHO05D003892 4.6e-10 68.2 83 48.2
TAR633G1761 Trochodendron aralioides HOM05D000055 ORTHO05D003892 6.1e-10 67.8 95 42.1
AUR62001489 Chenopodium quinoa HOM05D000055 ORTHO05D003892 7.9e-10 67.4 94 43.6
AUR62009881 Chenopodium quinoa HOM05D000055 ORTHO05D003892 7.9e-10 67.4 94 43.6
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 7.9e-10 67.4 91 44.0
Sc06g0006930 Simmondsia chinensis HOM05D000055 ORTHO05D003892 7.9e-10 67.4 98 41.8
Mapoly0069s0064 Marchantia polymorpha HOM05D000055 ORTHO05D003892 1.4e-09 66.6 91 38.5
Medtr4g059560 Medicago truncatula HOM05D000055 ORTHO05D003892 2.3e-09 65.9 91 44.0
Hund05740 Selenicereus undatus HOM05D000055 ORTHO05D003892 2.3e-09 65.9 94 43.6
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 2.3e-09 65.9 91 44.0
Pp3c22_18850 Physcomitrium patens HOM05D000055 ORTHO05D003892 3.0e-09 65.5 91 39.6
SEGI_36554 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 3.9e-09 65.1 91 42.9
VMungo1127G1522 Vigna mungo HOM05D000055 ORTHO05D003892 5.1e-09 64.7 91 42.9
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 6.7e-09 64.3 91 42.9
Potri.003G215201 Populus trichocarpa HOM05D000055 ORTHO05D003892 1.1e-08 63.5 87 43.7
SEGI_01883 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.1e-08 63.5 87 42.5
Glyma.12G068500 Glycine max HOM05D000055 ORTHO05D003892 1.5e-08 63.2 91 42.9
Glyma.11G147500 Glycine max HOM05D000055 ORTHO05D003892 1.9e-08 62.8 91 42.9
SMO275G0017 Selaginella moellendorffii HOM05D000055 ORTHO05D003892 1.9e-08 62.8 93 36.6
Potri.001G010700 Populus trichocarpa HOM05D000055 ORTHO05D003892 3.3e-08 62.0 95 40.0
Cc00_g20340 Coffea canephora HOM05D000055 ORTHO05D153423 4.3e-08 61.6 71 47.9
Oeu025527.2 Olea europaea HOM05D000055 ORTHO05D003892 1.7e-07 59.7 80 43.8
GSVIVG01025378001 Vitis vinifera HOM05D000055 ORTHO05D003892 1.7e-07 59.7 95 40.0
Sabra03G0160600 Salix brachista HOM05D000055 ORTHO05D003892 8.2e-07 57.4 87 42.5
Duzib114G0286 Durio zibethinus HOM05D000055 ORTHO05D003892 1.1e-06 57.0 72 44.4
SEGI_03957 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.4e-06 56.6 91 39.6
Ca_01420_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 3.1e-06 55.5 74 44.6


User provided reference genes

Program Settings