Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 7.6e-112 407.1 201 100.0
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 2.8e-82 308.9 162 85.2
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.7e-79 299.7 164 82.9
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 2.9e-79 298.9 140 96.4
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 6.5e-79 297.7 162 84.0
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 8.5e-79 297.4 162 83.3
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 1.5e-78 296.6 164 82.3
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.9e-78 296.2 162 81.5
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 7.2e-78 294.3 162 81.5
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 7.2e-78 294.3 161 82.0
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 9.4e-78 293.9 161 81.4
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 1.6e-77 293.1 162 80.9
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 1.6e-77 293.1 163 81.6
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 2.1e-77 292.7 162 80.9
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 2.1e-77 292.7 162 80.2
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 2.1e-77 292.7 164 79.9
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.1e-77 292.7 162 80.2
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 2.7e-77 292.4 162 80.9
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 3.6e-77 292.0 165 80.0
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 4.7e-77 291.6 162 78.4
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 8.0e-77 290.8 162 80.2
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 1.0e-76 290.4 162 80.2
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 1.4e-76 290.0 162 79.6
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 3.0e-76 288.9 162 80.2
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 4.0e-76 288.5 165 78.2
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 5.2e-76 288.1 164 78.7
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.2e-76 288.1 163 77.3
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 8.8e-76 287.3 162 79.6
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.2e-75 287.0 163 76.7
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 1.2e-75 287.0 165 78.2
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 2.0e-75 286.2 162 79.6
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 2.0e-75 286.2 162 79.6
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 2.6e-75 285.8 162 78.4
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 2.6e-75 285.8 157 79.0
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 4.4e-75 285.0 164 79.9
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 4.4e-75 285.0 162 78.4
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 5.7e-75 284.6 162 78.4
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 5.7e-75 284.6 162 74.7
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 9.7e-75 283.9 161 77.0
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 9.7e-75 283.9 186 70.4
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 1.7e-74 283.1 161 77.0
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 3.7e-74 282.0 184 72.3
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 3.7e-74 282.0 161 81.4
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 3.7e-74 282.0 162 77.2
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 3.7e-74 282.0 162 77.2
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 3.7e-74 282.0 162 77.2
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 3.7e-74 282.0 162 75.9
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 4.8e-74 281.6 162 78.4
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 4.8e-74 281.6 162 80.9
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 6.3e-74 281.2 162 75.9
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 6.3e-74 281.2 162 79.0
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.4e-73 280.0 162 79.6
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 1.4e-73 280.0 166 72.9
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 1.8e-73 279.6 160 78.1
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 4.1e-73 278.5 162 79.0
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.3e-73 278.1 163 74.8
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 5.3e-73 278.1 164 78.0
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 9.1e-73 277.3 162 79.0
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 9.1e-73 277.3 162 79.0
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.0e-72 276.2 162 78.4
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.0e-72 276.2 147 83.0
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 2.7e-72 275.8 162 77.2
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 3.5e-72 275.4 163 77.3
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 4.5e-72 275.0 161 77.0
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 5.9e-72 274.6 163 76.7
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 5.9e-72 274.6 162 77.2
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 3.8e-71 271.9 163 76.7
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 5.0e-71 271.6 162 75.9
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 5.0e-71 271.6 162 76.5
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.9e-70 269.6 161 74.5
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.5e-70 269.2 162 72.8
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 3.2e-70 268.9 162 76.5
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 3.2e-70 268.9 162 76.5
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 9.4e-70 267.3 162 75.3
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 9.4e-70 267.3 162 75.9
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.2e-69 266.9 171 70.2
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 2.1e-69 266.2 166 73.5
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 2.7e-69 265.8 162 75.9
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 6.1e-69 264.6 162 74.7
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 8.0e-69 264.2 161 75.2
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.4e-68 263.5 162 74.7
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 1.4e-68 263.5 162 75.9
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 2.3e-68 262.7 163 75.5
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 2.3e-68 262.7 163 75.5
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.0e-68 262.3 162 74.7
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 2.6e-67 259.2 162 72.8
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 2.6e-67 259.2 162 72.8
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 2.6e-67 259.2 162 72.8
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 2.6e-67 259.2 162 72.8
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 7.5e-67 257.7 162 72.8
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 7.5e-67 257.7 162 72.8
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 2.2e-66 256.1 160 74.4
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 1.1e-65 253.8 148 74.3
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 1.1e-65 253.8 160 71.2
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.8e-65 253.1 160 70.6
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.8e-65 253.1 162 68.5
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.3e-63 246.9 166 68.7
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 7.2e-62 241.1 244 52.0
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 1.6e-61 240.0 160 68.1
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.8e-61 239.2 207 58.0
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 3.6e-61 238.8 162 67.3
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 8.0e-61 237.7 144 76.4
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 6.8e-60 234.6 212 55.2
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 5.7e-59 231.5 126 80.2
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 1.3e-58 230.3 128 81.2
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.8e-57 226.5 126 80.2
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 9.2e-57 224.2 165 60.6
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 3.5e-56 222.2 128 78.9
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 7.8e-56 221.1 151 68.2
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 1.3e-55 220.3 128 78.1
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 4.4e-51 205.3 166 60.2
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.4e-49 199.5 150 60.0
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 3.2e-49 199.1 148 60.8
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 5.4e-49 198.4 146 63.7
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 2.1e-45 186.4 104 79.8
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 2.8e-45 186.0 107 76.6
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.1e-44 184.1 103 80.6
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.1e-44 184.1 104 79.8
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 4.4e-43 178.7 104 75.0
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 4.4e-43 178.7 105 75.2
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.9e-41 173.3 97 79.4
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.9e-41 173.3 112 68.8
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.6e-37 160.2 105 67.6
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.8e-37 159.5 91 78.0
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 3.1e-36 156.0 127 55.1
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 5.2e-36 155.2 224 39.3
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 5.2e-36 155.2 102 68.6
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.7e-34 150.2 90 80.0
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 2.9e-34 149.4 131 53.4
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.3e-31 140.6 85 69.4
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 6.6e-31 138.3 91 68.1
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 3.5e-24 115.9 82 65.9
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 3.3e-22 109.4 99 56.6
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 4.4e-19 99.0 162 39.5
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 2.9e-18 96.3 159 36.5
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 9.6e-14 81.3 45 82.2


User provided reference genes

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