Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 3.3e-43 177.9 87 100.0
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 5.6e-27 124.0 86 70.9
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 1.4e-25 119.4 84 70.2
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 4.0e-25 117.9 87 65.5
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 8.9e-25 116.7 87 64.4
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 2.6e-24 115.2 87 66.7
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 2.6e-24 115.2 87 65.5
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.9e-23 111.7 87 66.7
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 4.9e-23 110.9 86 64.0
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 4.9e-23 110.9 87 66.7
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 1.9e-22 109.0 87 64.4
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 2.4e-22 108.6 87 60.9
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 3.2e-22 108.2 76 65.8
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 5.4e-22 107.5 73 67.1
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 1.2e-21 106.3 73 69.9
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.2e-21 106.3 84 65.5
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 1.6e-21 105.9 83 62.7
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 1.6e-21 105.9 72 72.2
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 2.1e-21 105.5 76 63.2
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 6.0e-21 104.0 87 63.2
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 2.3e-20 102.1 83 62.7
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 3.0e-20 101.7 73 67.1
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 5.1e-20 100.9 71 69.0
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 6.6e-20 100.5 72 68.1
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 8.6e-20 100.1 71 67.6
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 8.6e-20 100.1 71 67.6
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.1e-19 99.8 73 68.5
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.1e-19 99.8 73 68.5
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 1.5e-19 99.4 71 67.6
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 1.5e-19 99.4 76 64.5
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.9e-19 99.0 73 71.2
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 2.5e-19 98.6 73 67.1
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 4.3e-19 97.8 84 63.1
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 5.6e-19 97.4 73 65.8
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 1.6e-18 95.9 76 60.5
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 2.1e-18 95.5 86 58.1
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 2.1e-18 95.5 81 63.0
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 2.8e-18 95.1 64 70.3
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 3.6e-18 94.7 73 68.5
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 1.1e-17 93.2 75 61.3
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 1.1e-17 93.2 72 62.5
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 1.4e-17 92.8 72 61.1
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 2.4e-17 92.0 107 47.7
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 2.4e-17 92.0 71 59.2
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 4.0e-17 91.3 75 60.0
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 6.8e-17 90.5 75 60.0
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 8.9e-17 90.1 81 55.6
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 1.2e-16 89.7 81 55.6
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 1.2e-16 89.7 74 60.8
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 1.2e-16 89.7 89 58.4
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 1.2e-16 89.7 80 57.5
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 1.2e-16 89.7 71 66.2
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 1.5e-16 89.4 72 62.5
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 1.5e-16 89.4 75 60.0
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 1.5e-16 89.4 75 58.7
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 1.5e-16 89.4 76 61.8
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 1.5e-16 89.4 64 67.2
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 2.6e-16 88.6 80 55.0
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 2.6e-16 88.6 71 59.2
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 2.6e-16 88.6 71 59.2
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 4.4e-16 87.8 72 61.1
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 4.4e-16 87.8 70 58.6
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 5.8e-16 87.4 75 57.3
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 5.8e-16 87.4 75 58.7
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 5.8e-16 87.4 76 57.9
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 7.6e-16 87.0 64 60.9
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 1.7e-15 85.9 74 58.1
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 3.8e-15 84.7 72 59.7
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.4e-15 84.0 85 54.1
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 8.4e-15 83.6 75 56.0
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 2.1e-13 79.0 81 51.9
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 2.7e-13 78.6 71 54.9
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 7.8e-13 77.0 53 69.8
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 7.8e-13 77.0 53 69.8
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 1.3e-12 76.3 76 52.6
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 2.3e-12 75.5 64 54.7
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 3.9e-12 74.7 66 54.5
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 2.5e-11 72.0 71 47.9
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 1.8e-09 65.9 61 52.5
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 3.8e-07 58.2 55 52.7
SGA_v2.0_scaffold114G31816 Striga asiatica HOM05D007721 ORTHO05D009811 8.4e-07 57.0 48 58.3
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 1.1e-06 56.6 43 65.1
Nn2g15144 Nelumbo nucifera HOM05D007721 ORTHO05D009811 5.4e-06 54.3 54 53.7


User provided reference genes

Program Settings