Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.6e-246 855.9 517 100.0
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 3.1e-117 426.4 533 53.8
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.0e-107 394.8 523 49.3
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 5.0e-107 392.5 523 53.5
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.0e-103 380.6 480 60.2
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 4.8e-102 375.9 481 60.7
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 3.1e-101 373.2 534 47.6
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 7.0e-101 372.1 534 47.6
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.3e-99 367.1 407 54.3
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 3.6e-97 359.8 583 51.8
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.7e-97 359.4 497 60.2
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.6e-95 353.6 516 45.2
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.4e-95 352.8 535 48.4
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.7e-92 343.6 542 48.5
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.3e-91 341.3 488 49.8
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 5.0e-91 339.3 534 48.9
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 2.1e-89 334.0 532 49.6
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.0e-88 330.1 454 46.0
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 5.2e-88 329.3 540 44.8
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.2e-87 328.2 530 47.4
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.2e-87 328.2 529 45.7
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.2e-87 328.2 529 45.7
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.6e-87 327.0 518 44.4
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.6e-87 327.0 525 47.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 2.6e-87 327.0 528 47.3
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 4.4e-87 326.2 459 47.9
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.3e-86 324.7 518 45.8
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 3.7e-86 323.2 502 44.6
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.0e-84 317.4 536 44.8
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.0e-83 315.1 532 42.1
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 8.6e-83 312.0 539 45.8
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 8.6e-83 312.0 544 42.1
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.3e-82 310.1 520 42.9
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 9.5e-82 308.5 517 46.6
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.6e-81 307.8 539 41.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 4.7e-81 306.2 527 44.6
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 6.2e-81 305.8 517 47.4
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.1e-80 305.1 392 51.3
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.4e-80 304.7 432 47.7
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 5.2e-80 302.8 523 40.5
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.2e-80 302.8 530 42.6
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 8.9e-80 302.0 569 43.9
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 8.9e-80 302.0 532 41.7
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.2e-79 301.6 549 41.0
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 5.8e-79 299.3 572 41.4
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.9e-78 297.0 517 43.5
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.1e-77 295.0 534 40.6
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.4e-77 294.7 541 40.7
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.9e-77 294.3 399 51.1
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 7.0e-77 292.4 524 44.3
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.2e-76 291.6 537 42.1
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 3.5e-76 290.0 525 41.3
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 6.0e-76 289.3 527 41.2
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.7e-75 287.7 530 40.2
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 5.1e-75 286.2 532 42.9
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 8.6e-75 285.4 539 42.5
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.9e-74 284.3 537 43.9
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.6e-73 281.2 526 40.7
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.1e-73 280.8 476 46.6
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.1e-72 276.9 546 40.3
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 8.9e-72 275.4 509 51.5
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 1.5e-71 274.6 401 48.1
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.3e-70 271.6 515 42.1
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 5.4e-69 266.2 404 43.6
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 6.0e-68 262.7 353 48.2
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 5.1e-67 259.6 414 44.7
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 5.1e-67 259.6 414 44.7
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.6e-67 259.2 560 37.5
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 8.6e-67 258.8 507 41.2
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.1e-66 258.5 509 40.5
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.3e-66 256.5 533 38.8
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 5.6e-66 256.1 554 39.7
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 5.6e-66 256.1 532 39.5
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.6e-65 254.6 540 36.7
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.8e-65 253.8 497 46.7
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 8.1e-65 252.3 564 36.9
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.1e-64 250.4 372 52.2
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.0e-64 250.0 402 41.0
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 8.9e-64 248.8 520 39.8
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 8.9e-64 248.8 536 38.6
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.0e-63 247.7 520 38.8
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 3.4e-63 246.9 543 37.4
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.4e-62 242.3 556 37.2
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.1e-61 241.9 416 42.5
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 3.5e-60 236.9 323 48.9
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 2.3e-59 234.2 537 40.8
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 2.5e-58 230.7 401 43.1
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 4.3e-58 229.9 530 37.7
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.3e-58 229.2 388 43.3
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 9.6e-58 228.8 280 51.4
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.2e-57 228.4 404 42.8
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.6e-57 228.0 518 36.1
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 8.1e-57 225.7 534 36.0
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.4e-56 224.9 564 37.6
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 3.4e-55 220.3 367 43.3
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 2.4e-53 214.2 526 39.0
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 9.3e-53 212.2 331 46.2
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.7e-52 210.7 526 35.4
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 8.7e-51 205.7 521 39.3
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 3.3e-50 203.8 406 42.1
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.1e-48 197.2 513 32.4
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 6.4e-46 189.5 511 37.2
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 6.4e-46 189.5 489 35.0
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.4e-45 188.3 402 34.6
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.6e-42 176.4 400 37.0
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 2.6e-39 167.5 512 35.5
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 7.6e-39 166.0 515 28.5
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 9.3e-37 159.1 334 37.1
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.2e-36 158.7 332 37.0
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.1e-36 157.9 319 37.6
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.1e-36 157.9 464 37.1
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.5e-36 157.1 407 34.6
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.3e-35 155.2 446 36.8
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.8e-35 154.8 514 33.9
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.6e-33 148.3 498 34.9
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.8e-33 147.5 127 59.1
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.0e-31 141.4 408 31.6
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 5.8e-31 139.8 406 31.8
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.7e-30 138.3 383 33.2
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-29 135.6 407 31.2
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.1e-29 135.6 268 46.3
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.2e-29 134.0 408 30.9
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 7.1e-29 132.9 407 30.7
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 3.5e-28 130.6 203 57.1
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 7.9e-28 129.4 505 32.5
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.3e-27 128.6 384 35.9
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.8e-27 128.3 404 30.7
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.8e-27 128.3 386 35.8
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.3e-27 127.9 204 48.0
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.9e-27 127.1 251 37.1
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.1e-26 125.6 300 34.7
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 3.3e-26 124.0 383 31.3
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 7.4e-26 122.9 268 36.2
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 6.1e-20 103.2 144 47.2
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.4e-19 102.1 126 51.6
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 9.7e-18 95.9 132 43.2
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 4.5e-15 87.0 67 65.7
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.4e-11 75.5 97 40.2
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.3e-10 70.9 82 52.4
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.1e-08 64.3 174 32.2
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 3.5e-07 60.8 170 30.6
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 1.3e-06 58.9 337 23.7


User provided reference genes

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