Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 6.0e-211 737.3 375 100.0
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 2.8e-152 542.3 343 80.8
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.0e-149 533.9 369 75.1
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 1.1e-148 530.4 369 75.9
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 3.6e-147 525.4 375 73.3
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 4.7e-147 525.0 369 74.5
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 4.7e-147 525.0 369 74.5
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.4e-146 523.5 369 74.3
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 2.3e-146 522.7 326 80.4
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 3.0e-146 522.3 364 75.3
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 5.2e-146 521.5 372 74.2
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 8.8e-146 520.8 350 76.3
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 8.8e-146 520.8 340 77.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 3.4e-145 518.8 365 74.8
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 4.4e-145 518.5 339 77.6
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.4e-145 518.5 351 76.1
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.7e-144 516.5 373 73.2
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 1.7e-144 516.5 348 76.4
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 3.7e-144 515.4 372 72.6
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 6.3e-144 514.6 335 76.7
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 1.1e-143 513.8 378 70.9
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.1e-143 513.8 373 73.2
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.4e-143 512.7 340 76.8
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 4.1e-143 511.9 334 78.4
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.1e-143 511.9 374 70.6
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 4.1e-143 511.9 355 72.7
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 5.4e-143 511.5 370 73.0
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 7.0e-143 511.1 343 75.5
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 7.0e-143 511.1 381 71.4
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.2e-142 510.4 370 71.9
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.7e-142 509.2 316 80.4
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 3.5e-142 508.8 367 71.9
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 4.5e-142 508.4 345 75.7
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.9e-142 508.1 368 72.0
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 7.7e-142 507.7 356 74.2
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.7e-141 506.5 350 77.1
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 1.7e-141 506.5 347 75.8
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.9e-141 505.8 384 70.8
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 3.8e-141 505.4 368 71.7
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.5e-140 503.4 381 71.1
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.9e-140 503.1 379 70.7
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.9e-140 503.1 382 70.9
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.9e-140 503.1 349 73.4
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 2.5e-140 502.7 372 72.3
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 5.5e-140 501.5 381 70.1
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.2e-139 500.4 327 76.5
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.6e-139 500.0 379 70.4
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.6e-139 500.0 359 72.4
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 1.6e-139 500.0 362 71.8
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.8e-139 499.2 362 71.8
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.6e-139 498.8 373 71.6
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 4.7e-139 498.4 378 69.0
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 6.1e-139 498.0 387 69.5
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 6.1e-139 498.0 373 71.0
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 8.0e-139 497.7 360 72.8
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.4e-138 496.9 318 78.9
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.4e-138 496.9 372 71.0
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 2.3e-138 496.1 370 70.0
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 6.8e-138 494.6 376 69.9
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 8.9e-138 494.2 366 71.3
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.5e-137 493.4 401 67.3
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.5e-137 493.4 349 73.1
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.0e-137 493.0 383 69.2
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.6e-137 492.7 401 67.1
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 7.5e-137 491.1 325 75.1
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 1.7e-136 490.0 386 68.1
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 2.8e-136 489.2 340 73.5
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.7e-136 488.8 398 66.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 4.1e-135 485.3 375 66.7
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 5.4e-135 485.0 355 72.4
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 9.2e-135 484.2 370 68.4
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.6e-134 483.4 368 67.9
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.5e-134 482.3 341 74.2
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 3.5e-134 482.3 300 80.7
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 3.5e-134 482.3 369 69.1
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 5.9e-134 481.5 386 68.7
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 7.8e-134 481.1 384 68.5
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.0e-133 480.7 380 69.2
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.3e-133 480.3 362 68.8
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.3e-133 479.6 381 67.5
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 5.0e-133 478.4 363 68.9
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.1e-132 477.2 370 66.8
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.1e-132 477.2 348 70.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 4.3e-132 475.3 344 71.8
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 5.6e-132 474.9 369 67.5
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.1e-131 473.0 279 84.2
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 3.6e-131 472.2 359 69.1
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 8.0e-131 471.1 333 72.1
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 8.9e-130 467.6 373 64.3
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 8.9e-130 467.6 340 67.6
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 4.4e-129 465.3 373 63.3
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 7.5e-129 464.5 353 66.3
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.9e-128 462.6 354 68.6
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 4.9e-128 461.8 364 67.3
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.1e-127 460.7 364 67.0
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.4e-127 460.3 376 66.5
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.2e-127 459.1 356 68.3
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.2e-127 457.6 334 70.1
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.7e-125 453.4 351 69.2
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 5.0e-125 451.8 336 69.3
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 4.3e-124 448.7 342 66.4
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 2.1e-123 446.4 352 68.2
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.6e-123 445.7 304 73.0
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 8.0e-123 444.5 346 67.3
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.4e-122 443.7 372 62.6
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 2.3e-122 443.0 324 66.0
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 6.8e-122 441.4 344 66.3
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 3.4e-121 439.1 342 66.4
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 9.8e-121 437.6 352 64.5
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 9.8e-121 437.6 352 64.5
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 1.3e-120 437.2 352 64.8
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.7e-120 436.8 353 64.6
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 2.2e-120 436.4 352 64.8
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.9e-120 436.0 342 64.9
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 6.4e-120 434.9 342 64.9
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.1e-119 434.1 342 64.6
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.4e-119 433.7 325 63.7
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 1.9e-119 433.3 305 74.8
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 4.1e-119 432.2 363 59.8
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.6e-118 430.3 343 65.0
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 3.5e-118 429.1 343 64.4
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 6.0e-118 428.3 343 65.6
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 7.8e-118 427.9 344 64.5
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 7.8e-118 427.9 344 64.5
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.0e-117 427.6 329 67.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 3.9e-117 425.6 343 64.4
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 1.1e-114 417.5 358 62.0
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 4.0e-114 415.6 336 64.6
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 6.4e-112 408.3 366 62.8
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.4e-111 407.1 334 59.9
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.4e-111 405.2 277 73.6
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 2.4e-106 389.8 343 60.3
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 6.4e-104 381.7 276 68.8
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 1.4e-103 380.6 352 58.2
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.6e-99 367.1 282 68.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 3.1e-98 362.8 277 72.2
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.1e-98 362.8 318 61.3
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 2.9e-96 356.3 307 57.0
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 2.3e-93 346.7 264 65.5
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 2.9e-88 329.7 246 71.5
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 3.8e-88 329.3 366 49.5
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 1.6e-86 323.9 348 52.3
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 1.6e-86 323.9 202 80.7
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 7.9e-86 321.6 221 74.7
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.0e-85 319.7 288 55.9
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.1e-84 317.8 206 77.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 2.8e-83 313.2 379 47.5
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-78 297.7 237 65.4
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 9.6e-76 288.1 199 72.9
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 5.3e-74 282.3 213 68.1
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 4.5e-73 279.3 244 61.1
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 4.8e-67 259.2 299 46.5
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.7e-54 216.9 180 66.1
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 1.1e-52 211.5 134 79.1
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 6.3e-51 205.7 132 75.0
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.3e-50 202.6 132 77.3
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 6.5e-40 169.1 176 51.1
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 1.8e-34 151.0 108 71.3
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 5.4e-34 149.4 89 76.4
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.1e-26 123.6 86 64.0
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 2.0e-25 120.9 271 27.7
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.5e-20 104.8 248 30.6


User provided reference genes

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