Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 5.2e-238 827.4 444 100.0
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 3.2e-126 456.1 468 57.9
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 4.0e-121 439.1 435 56.8
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.8e-120 435.3 436 58.0
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.9e-118 430.3 432 56.5
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.1e-113 414.5 471 55.2
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.4e-113 413.3 471 55.0
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 3.5e-109 399.4 436 55.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 3.4e-104 382.9 413 55.7
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.2e-103 380.2 405 55.1
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.4e-102 377.5 473 51.6
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 7.1e-102 375.2 470 50.0
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 4.6e-101 372.5 451 52.1
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 6.0e-101 372.1 404 55.9
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.3e-100 370.2 417 55.9
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.5e-99 367.5 452 51.5
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-98 362.5 459 49.7
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-98 362.5 459 49.7
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.1e-97 361.3 407 53.8
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 4.0e-97 359.4 408 55.9
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 7.6e-96 355.1 451 48.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.7e-95 354.0 447 50.1
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 8.4e-95 351.7 452 48.0
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.9e-94 350.5 447 49.4
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 3.2e-94 349.7 449 49.7
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.2e-94 349.4 456 49.8
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 3.5e-93 346.3 487 46.2
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 6.0e-93 345.5 473 47.1
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 6.0e-93 345.5 453 50.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.8e-92 344.0 392 54.1
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.8e-92 344.0 423 51.1
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.9e-92 342.8 453 47.9
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.1e-92 342.4 464 48.9
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.5e-91 340.9 445 50.8
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 5.6e-91 339.0 399 51.9
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.3e-90 337.8 387 55.3
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.7e-90 336.3 464 49.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 4.8e-90 335.9 450 47.3
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.1e-90 335.1 435 49.0
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.4e-89 334.3 448 48.7
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.8e-89 334.0 454 48.9
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.4e-89 333.6 448 48.4
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 3.1e-89 333.2 425 50.8
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 6.9e-89 332.0 481 47.4
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.5e-88 330.9 474 46.6
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.0e-88 330.5 437 49.2
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-88 329.7 459 48.4
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 5.8e-88 328.9 414 52.4
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 5.8e-88 328.9 427 48.0
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.6e-88 328.6 468 47.2
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 2.9e-87 326.6 449 47.9
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 4.9e-87 325.9 424 49.1
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 9.3e-86 321.6 367 53.7
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 2.1e-85 320.5 424 48.6
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 3.5e-85 319.7 453 46.4
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 2.3e-84 317.0 359 55.2
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.1e-83 314.7 418 50.5
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 2.8e-82 310.1 468 45.1
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 4.8e-82 309.3 416 48.3
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 5.3e-81 305.8 451 47.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 6.9e-81 305.4 444 45.7
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.6e-80 303.5 447 45.0
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 3.8e-79 299.7 453 45.5
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.4e-78 297.7 459 46.2
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.9e-78 297.4 418 49.3
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 4.2e-78 296.2 426 48.8
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.5e-75 287.7 437 43.7
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 9.7e-75 285.0 459 44.0
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 9.7e-75 285.0 435 44.6
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 6.3e-74 282.3 435 46.9
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 4.1e-73 279.6 350 49.4
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.7e-71 274.2 502 40.0
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.7e-71 274.2 402 46.8
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.7e-71 274.2 436 43.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 6.5e-71 272.3 452 41.2
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 8.5e-71 271.9 346 47.7
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.2e-70 270.0 304 54.3
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.5e-70 269.2 418 45.5
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-69 268.1 414 45.7
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 6.1e-69 265.8 457 41.6
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.4e-68 264.6 411 43.1
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.3e-68 263.8 358 45.0
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 3.0e-68 263.5 386 44.6
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.1e-68 262.7 432 44.0
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.3e-67 260.0 469 40.5
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 4.3e-67 259.6 397 43.6
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-65 254.6 439 41.7
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.4e-65 253.8 394 42.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.7e-63 247.7 409 43.0
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 4.2e-62 243.0 407 41.3
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 7.2e-62 242.3 293 48.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.1e-61 240.7 438 41.3
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.9e-61 238.8 340 44.1
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 6.7e-60 235.7 407 40.3
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.1e-59 235.0 358 43.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 7.4e-59 232.3 358 43.9
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.1e-57 228.4 349 42.4
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-57 228.0 351 41.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 3.1e-57 226.9 348 42.5
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.1e-57 226.9 348 45.4
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 4.1e-57 226.5 349 42.1
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 5.9e-56 222.6 358 43.0
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 4.2e-54 216.5 433 40.4
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 6.1e-53 212.6 336 42.6
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 4.0e-52 209.9 354 40.1
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 7.4e-51 205.7 337 40.4
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 7.4e-51 205.7 337 40.4
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.8e-50 203.8 367 41.1
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.8e-49 201.1 337 39.8
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.0e-48 197.6 358 40.2
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 2.0e-48 197.6 202 57.4
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-47 195.3 295 44.7
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 8.5e-47 192.2 230 52.6
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.4e-44 184.9 299 43.5
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 8.8e-44 182.2 315 41.9
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-43 181.4 275 46.2
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 5.7e-43 179.5 343 40.5
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 7.0e-41 172.6 334 38.0
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-38 164.5 203 49.8
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 2.7e-37 160.6 253 45.1
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.6e-37 160.2 251 43.4
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.7e-37 159.8 226 43.8
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.0e-36 157.1 270 39.3
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 7.0e-33 146.0 149 55.0
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.2e-29 135.2 139 59.0
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.1e-29 134.4 221 43.0
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 4.4e-27 126.7 148 51.4
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.5e-27 125.9 228 42.1
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.8e-25 121.3 154 50.6
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.8e-25 121.3 150 52.0
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 3.2e-25 120.6 359 29.5
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 3.7e-18 97.1 92 62.0
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.7e-15 88.2 84 57.1
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.2e-10 71.2 180 31.7
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.4e-09 68.6 96 46.9
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 4.1e-09 67.0 105 41.9
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 9.2e-09 65.9 115 35.7
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.9e-06 58.2 102 39.2
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.9e-06 58.2 130 31.5


User provided reference genes

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