Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 2.4e-201 705.3 360 100.0
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.7e-162 576.2 360 77.8
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.1e-160 569.3 354 80.5
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.7e-160 568.9 360 76.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 7.9e-160 567.4 360 76.1
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 5.1e-159 564.7 359 77.7
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 2.2e-157 559.3 360 76.9
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.6e-155 552.4 360 75.8
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 2.9e-154 548.9 360 75.6
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.0e-154 548.1 358 75.4
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 6.5e-154 547.7 359 74.7
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 2.5e-153 545.8 361 75.1
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 3.2e-153 545.4 358 75.4
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 9.4e-153 543.9 356 76.1
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.7e-152 542.3 359 75.5
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 3.6e-152 542.0 360 73.3
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.6e-152 542.0 358 75.1
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 4.6e-152 541.6 360 74.7
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.9e-152 540.8 360 75.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.9e-152 540.8 360 75.3
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 2.3e-151 539.3 357 74.8
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 5.1e-151 538.1 360 72.8
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 6.7e-151 537.7 354 75.4
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 2.0e-150 536.2 360 74.7
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 4.3e-150 535.0 359 74.4
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.8e-149 532.3 360 73.6
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 3.7e-149 531.9 360 73.6
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 4.8e-149 531.6 356 73.6
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.1e-148 530.4 356 74.4
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.1e-148 530.4 360 73.3
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.4e-148 530.0 363 73.8
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 2.4e-148 529.3 360 73.9
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 4.1e-148 528.5 354 73.2
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 5.3e-148 528.1 356 73.0
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 5.3e-148 528.1 361 70.4
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 6.9e-148 527.7 360 73.3
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 1.5e-147 526.6 358 73.5
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 1.5e-147 526.6 356 73.6
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.0e-147 526.2 361 73.4
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.2e-146 522.7 356 73.6
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.9e-146 522.3 356 72.2
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 2.9e-146 522.3 359 73.0
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 3.8e-146 521.9 362 72.1
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.1e-145 520.4 356 71.3
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.2e-145 518.8 388 69.1
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 5.5e-145 518.1 356 74.4
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 7.2e-145 517.7 356 73.3
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 9.4e-145 517.3 360 70.6
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 1.2e-144 516.9 357 72.8
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 1.6e-144 516.5 356 72.8
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 2.7e-144 515.8 356 73.3
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 3.6e-144 515.4 356 71.6
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 6.1e-144 514.6 385 68.6
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 6.1e-144 514.6 356 71.6
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 3.0e-143 512.3 360 70.6
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 3.0e-143 512.3 358 72.6
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 5.1e-143 511.5 356 71.1
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 6.7e-143 511.1 356 70.5
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.1e-142 510.4 356 70.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.1e-140 503.8 358 70.7
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.4e-140 503.4 356 71.3
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.8e-140 503.1 359 71.3
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 3.1e-140 502.3 317 77.3
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 9.1e-140 500.7 356 70.8
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.2e-139 500.4 356 71.1
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.6e-139 499.2 356 70.8
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 4.5e-139 498.4 355 71.0
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 7.7e-139 497.7 360 69.4
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 3.8e-138 495.4 358 67.9
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 6.5e-138 494.6 355 71.5
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.2e-137 491.9 360 69.2
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 9.4e-137 490.7 360 69.4
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 4.7e-136 488.4 356 69.7
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.8e-135 486.5 363 69.4
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.3e-135 486.1 360 68.6
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 2.4e-132 476.1 357 65.0
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 8.5e-130 467.6 360 67.2
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.2e-129 465.7 360 66.7
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 2.7e-128 462.6 375 65.3
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.6e-128 462.2 357 63.3
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.4e-127 460.3 473 55.2
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 4.0e-127 458.8 379 64.1
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 9.8e-126 454.1 355 65.1
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.3e-125 453.8 361 63.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 9.1e-124 447.6 358 63.7
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 1.6e-123 446.8 356 64.6
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.9e-121 439.9 358 61.5
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.5e-121 439.5 355 65.4
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.8e-111 406.8 356 57.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 7.5e-110 401.4 357 60.2
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.0e-103 380.9 257 71.6
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.8e-103 380.2 258 72.1
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.8e-103 380.2 251 71.7
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 7.5e-102 374.8 251 73.7
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.2e-100 369.4 356 50.0
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.1e-96 356.7 359 56.0
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.4e-92 344.0 357 47.9
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.6e-91 340.5 380 46.1
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 2.7e-91 339.7 292 62.7
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.6e-88 330.5 355 46.2
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.4e-86 322.4 364 47.0
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 9.6e-81 304.7 343 44.3
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.6e-80 303.9 201 74.1
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 2.1e-80 303.5 204 69.6
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.6e-75 287.3 343 43.7
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.1e-72 276.9 355 39.7
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.0e-71 271.6 358 39.9
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.7e-66 257.3 354 39.8
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.0e-50 204.9 149 71.8
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.6e-46 190.3 148 64.9
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.5e-41 174.5 187 54.0
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 2.2e-37 160.6 235 43.4
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 4.2e-36 156.4 153 59.5
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 4.2e-36 156.4 104 74.0
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 5.1e-34 149.4 98 74.5
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 2.5e-33 147.1 404 30.0
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.3e-31 139.4 128 55.5
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 9.1e-31 138.7 84 79.8
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 7.7e-30 135.6 359 30.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-27 128.3 91 70.3
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 6.1e-27 125.9 136 54.4
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 3.3e-25 120.2 98 65.3
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 5.7e-25 119.4 92 66.3
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 5.9e-22 109.4 128 53.9
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 3.8e-21 106.7 105 51.4
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 3.8e-21 106.7 105 51.4
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.0e-21 106.3 88 64.8
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.5e-20 104.8 88 63.6
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.7e-16 91.3 97 53.6
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 1.7e-13 81.3 87 51.7
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 2.9e-13 80.5 51 68.6


User provided reference genes

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