Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.7e-64 248.1 125 100.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.9e-53 211.8 130 80.0
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 8.5e-53 210.3 130 78.5
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 8.5e-53 210.3 130 79.2
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.5e-52 209.5 130 79.2
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.5e-52 209.5 130 79.2
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.5e-52 209.5 130 79.2
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.5e-52 208.8 130 78.5
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.6e-51 206.1 130 76.9
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.6e-51 206.1 130 76.9
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.6e-51 206.1 130 76.9
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 2.1e-51 205.7 130 77.7
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.1e-51 205.7 130 78.5
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 2.7e-51 205.3 130 76.2
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 3.6e-51 204.9 130 78.5
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.6e-51 204.9 130 78.5
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 6.1e-51 204.1 130 77.7
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.1e-51 204.1 130 76.2
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 8.0e-51 203.8 130 76.2
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.0e-50 203.4 130 75.4
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.4e-50 203.0 130 74.6
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.3e-50 202.2 130 75.4
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.0e-50 201.8 130 75.4
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.0e-50 201.4 130 74.6
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 5.2e-50 201.1 130 76.9
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 5.2e-50 201.1 130 74.6
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 5.2e-50 201.1 130 74.6
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 6.7e-50 200.7 130 76.2
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 6.7e-50 200.7 130 76.2
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 6.7e-50 200.7 130 73.8
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 6.7e-50 200.7 130 76.9
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 8.8e-50 200.3 129 76.7
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.8e-50 200.3 130 75.4
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.8e-50 200.3 130 73.8
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.8e-50 200.3 130 73.8
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 8.8e-50 200.3 130 76.9
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.5e-49 199.5 130 74.6
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-49 199.5 130 75.4
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.5e-49 199.5 130 72.3
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-49 199.5 130 76.2
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.5e-49 199.5 129 76.7
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.5e-49 199.5 130 74.6
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 2.0e-49 199.1 130 75.4
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.6e-49 198.7 129 76.0
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 2.6e-49 198.7 129 73.6
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 2.6e-49 198.7 129 73.6
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.6e-49 198.7 130 73.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 2.6e-49 198.7 130 73.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.6e-49 198.7 129 75.2
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.6e-49 198.7 130 73.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.6e-49 198.7 130 75.4
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.3e-49 198.4 130 74.6
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 3.3e-49 198.4 130 74.6
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 3.3e-49 198.4 130 73.8
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 4.4e-49 198.0 130 73.1
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 5.7e-49 197.6 129 72.9
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 5.7e-49 197.6 129 72.9
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 5.7e-49 197.6 129 74.4
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 5.7e-49 197.6 130 72.3
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.7e-49 197.6 130 73.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 5.7e-49 197.6 130 72.3
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 5.7e-49 197.6 130 70.8
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 7.5e-49 197.2 130 74.6
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 7.5e-49 197.2 130 74.6
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 7.5e-49 197.2 129 72.9
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 7.5e-49 197.2 126 75.4
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 7.5e-49 197.2 130 76.2
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 7.5e-49 197.2 130 73.8
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 9.7e-49 196.8 129 72.9
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 9.7e-49 196.8 130 73.1
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 9.7e-49 196.8 130 73.1
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 9.7e-49 196.8 129 74.4
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.3e-48 196.4 130 73.8
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.3e-48 196.4 130 73.8
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.3e-48 196.4 130 73.8
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.2e-48 195.7 130 73.1
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.8e-48 195.3 129 74.4
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 2.8e-48 195.3 130 72.3
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 3.7e-48 194.9 130 72.3
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 3.7e-48 194.9 129 73.6
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 3.7e-48 194.9 130 71.5
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 4.8e-48 194.5 130 73.8
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.8e-48 194.5 130 73.1
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 4.8e-48 194.5 129 72.9
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.3e-48 194.1 130 72.3
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 6.3e-48 194.1 130 73.1
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 6.3e-48 194.1 130 73.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 6.3e-48 194.1 130 73.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.1e-47 193.4 130 73.8
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 1.4e-47 193.0 149 67.1
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.4e-47 193.0 130 71.5
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.4e-47 193.0 130 72.3
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.8e-47 192.6 130 72.3
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.4e-47 192.2 130 73.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 5.3e-47 191.0 154 63.0
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 7.0e-47 190.7 130 70.8
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 7.0e-47 190.7 130 71.5
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.6e-46 189.5 129 69.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.0e-46 189.1 130 71.5
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 5.9e-46 187.6 130 70.8
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.0e-45 186.8 130 67.7
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.3e-45 186.4 132 67.4
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 3.8e-45 184.9 129 69.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 3.8e-45 184.9 129 69.8
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-44 183.3 130 70.0
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-44 183.3 130 70.0
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 9.4e-44 180.3 130 66.2
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.7e-43 178.7 129 68.2
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 3.6e-43 178.3 130 66.2
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 3.6e-43 178.3 129 68.2
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.7e-43 177.9 129 66.7
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.1e-43 177.6 129 67.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 6.1e-43 177.6 129 66.7
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.0e-42 175.3 129 65.9
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.5e-41 172.9 129 64.3
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 1.5e-41 172.9 130 64.6
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 2.6e-41 172.2 129 65.9
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 7.5e-41 170.6 130 63.1
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 2.2e-40 169.1 129 64.3
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.8e-40 168.7 130 60.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.8e-39 166.0 132 62.1
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 3.1e-39 165.2 128 66.4
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 2.0e-38 162.5 201 46.8
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.9e-37 158.7 124 64.5
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 8.6e-37 157.1 124 63.7
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 8.6e-37 157.1 92 81.5
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.5e-36 155.6 231 41.6
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 2.8e-35 152.1 92 78.3
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.0e-34 150.2 108 69.4
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.4e-34 149.8 85 82.4
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.3e-34 149.1 85 81.2
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 2.3e-34 149.1 106 70.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 3.0e-34 148.7 88 78.4
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 3.0e-34 148.7 88 78.4
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.8e-31 139.4 84 78.6
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 1.8e-26 122.9 99 62.6
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.4e-23 113.2 130 51.5
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.5e-20 103.2 135 37.8
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 9.5e-20 100.5 70 68.6
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 9.2e-15 84.0 78 57.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.9e-07 59.7 38 68.4
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 3.2e-07 58.9 47 61.7
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 5.4e-07 58.2 46 60.9
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 6.0e-06 54.7 47 57.4
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 7.8e-06 54.3 47 59.6


User provided reference genes

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