Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 4.3e-264 914.1 446 100.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 6.1e-194 681.0 446 74.2
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.0e-190 667.5 448 73.4
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 4.2e-187 658.3 442 71.9
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.2e-187 657.5 448 72.8
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 4.7e-186 654.8 443 71.3
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.4e-185 653.3 445 71.5
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.8e-185 652.9 447 71.8
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.0e-185 652.1 447 70.9
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 6.7e-185 651.0 447 71.6
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.8e-183 645.6 443 71.1
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.4e-182 643.3 447 71.1
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.8e-182 642.9 441 70.1
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 4.1e-182 641.7 447 70.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.2e-181 640.2 447 70.5
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.6e-181 639.8 438 71.0
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 1.6e-181 639.8 449 71.5
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.6e-181 639.0 441 69.6
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.0e-180 637.1 445 71.2
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 2.2e-180 636.0 446 68.8
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.9e-179 632.9 447 69.1
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 4.2e-179 631.7 442 68.6
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 9.4e-179 630.6 446 68.6
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 9.4e-179 630.6 442 69.7
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 2.7e-178 629.0 446 69.5
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.0e-178 627.5 448 70.8
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.4e-177 626.7 440 69.1
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 6.7e-177 624.4 443 67.9
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.0e-176 622.9 437 68.9
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 2.0e-176 622.9 443 68.4
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.6e-176 622.5 442 68.6
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 3.3e-176 622.1 446 67.7
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 5.7e-176 621.3 441 68.5
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 5.7e-176 621.3 447 67.8
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.3e-175 620.2 445 67.6
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.3e-175 620.2 446 68.2
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 4.8e-175 618.2 446 67.7
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 8.2e-175 617.5 446 67.3
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 4.1e-174 615.1 442 67.6
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 5.3e-174 614.8 445 67.4
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 7.0e-174 614.4 442 67.4
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.6e-173 613.2 448 69.6
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-169 600.1 450 66.2
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 6.8e-169 597.8 441 66.2
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 8.8e-169 597.4 441 66.4
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 8.8e-169 597.4 444 65.1
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.5e-168 596.7 434 65.4
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.0e-168 596.3 431 65.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.6e-168 595.9 450 65.8
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.5e-168 594.3 442 65.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.3e-167 593.6 432 66.9
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.7e-167 593.2 434 66.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.7e-167 593.2 448 65.8
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.7e-167 592.0 442 64.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 3.1e-166 589.0 433 65.4
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 4.1e-166 588.6 427 67.2
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 5.4e-166 588.2 435 65.1
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.2e-165 587.0 448 64.1
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.6e-165 586.6 446 63.5
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.7e-165 585.9 439 64.5
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 3.5e-165 585.5 450 64.0
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.5e-163 579.3 437 63.4
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 2.5e-163 579.3 433 63.5
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 4.7e-162 575.1 439 64.5
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 6.1e-162 574.7 419 69.0
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.0e-161 573.9 455 62.0
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.3e-161 572.8 446 64.1
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 3.0e-161 572.4 432 63.9
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 6.8e-161 571.2 416 66.6
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 5.7e-160 568.2 412 66.3
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 2.8e-159 565.8 438 65.3
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 6.3e-159 564.7 401 69.1
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 1.8e-158 563.1 430 64.0
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 3.1e-158 562.4 447 62.4
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 3.1e-158 562.4 447 62.4
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-156 557.0 437 65.4
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-156 557.0 437 65.4
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.7e-156 556.6 431 62.9
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 3.3e-155 552.4 446 63.0
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.2e-154 550.4 444 63.5
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 4.7e-154 548.5 431 62.6
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 8.0e-154 547.7 437 61.8
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 1.0e-153 547.4 412 63.8
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 5.2e-153 545.0 399 66.4
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.5e-152 543.5 439 62.2
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.3e-151 540.4 391 66.2
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.7e-151 540.0 452 61.5
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 2.9e-151 539.3 443 63.0
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.2e-150 534.3 346 72.8
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.0e-149 533.1 442 64.0
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.7e-149 532.7 425 60.5
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 7.8e-149 531.2 466 59.0
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.3e-148 530.4 348 74.4
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.0e-148 529.3 448 61.8
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 1.5e-147 526.9 443 59.1
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 7.3e-147 524.6 448 60.9
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 7.3e-147 524.6 452 61.1
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.2e-146 523.9 437 58.4
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.1e-146 523.1 433 59.6
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.8e-145 520.0 445 58.7
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 2.3e-145 519.6 443 58.5
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 4.0e-145 518.8 447 61.3
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 5.2e-145 518.5 448 60.5
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 5.8e-144 515.0 448 60.3
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.4e-142 510.4 382 64.1
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.9e-142 510.0 446 63.2
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 7.0e-142 508.1 444 59.2
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 9.2e-142 507.7 447 60.2
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 9.2e-142 507.7 446 59.9
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-141 506.9 349 68.5
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.6e-141 506.9 447 60.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.3e-140 503.8 447 59.1
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.0e-140 502.7 447 59.7
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 8.6e-140 501.1 447 60.2
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 8.6e-140 501.1 447 60.2
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.1e-139 500.7 448 59.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.9e-139 500.0 444 59.2
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 2.5e-139 499.6 446 59.4
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.3e-139 498.8 446 58.7
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 8.1e-138 494.6 349 66.8
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 3.7e-135 485.7 409 57.7
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.4e-134 483.8 368 65.2
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 7.3e-131 471.5 357 64.4
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 5.2e-129 465.3 319 68.3
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.4e-128 462.2 445 56.9
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.5e-123 446.4 350 62.3
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 3.2e-110 402.9 365 58.4
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.2e-110 402.5 384 55.5
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 6.2e-106 388.7 280 66.4
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 6.2e-106 388.7 280 66.4
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 4.2e-94 349.4 385 48.6
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 7.4e-91 338.6 438 44.5
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.2e-79 300.4 232 62.1
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 4.2e-70 269.6 187 68.4
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.1e-65 253.1 164 72.0
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 4.1e-65 253.1 394 41.1
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.2e-64 251.5 250 53.6
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.8e-60 237.7 146 75.3
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 8.5e-55 218.8 262 47.3
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.2e-44 183.0 107 77.6
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.0e-40 171.0 153 57.5
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 3.0e-31 140.6 140 56.4
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 6.8e-28 129.4 99 60.6
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 2.0e-27 127.9 110 63.6
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.7e-26 124.8 111 61.3
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.4e-12 78.6 52 65.4
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.7e-08 64.3 54 51.9


User provided reference genes

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