Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 3.4e-92 341.7 176 100.0
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.6e-87 325.5 176 97.2
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.5e-63 246.5 171 70.2
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 2.0e-63 246.1 168 70.8
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 2.2e-62 242.7 174 69.5
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.1e-61 240.4 168 71.4
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 1.1e-61 240.4 174 69.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.4e-61 239.2 171 65.5
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 5.4e-61 238.0 172 68.6
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 7.0e-61 237.7 170 69.4
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.2e-60 236.9 173 67.6
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.6e-60 236.5 174 68.4
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 3.5e-60 235.3 173 67.1
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 8.6e-59 230.7 173 65.3
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.6e-57 226.5 172 61.6
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 6.1e-57 224.6 172 64.0
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 8.0e-57 224.2 172 64.0
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.0e-56 222.2 170 61.2
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 1.2e-55 220.3 168 65.5
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 1.2e-55 220.3 154 68.8
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 2.0e-55 219.5 172 59.9
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 3.4e-55 218.8 169 62.7
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 9.8e-55 217.2 166 66.3
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 3.7e-54 215.3 164 64.6
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.4e-53 213.4 171 60.8
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 3.2e-53 212.2 160 62.5
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 1.3e-51 206.8 170 58.8
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 2.3e-51 206.1 165 59.4
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 5.0e-51 204.9 164 59.8
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.9e-50 203.0 164 59.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.5e-50 202.6 164 57.9
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.3e-50 202.2 164 59.1
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 7.3e-50 201.1 168 56.5
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 9.5e-50 200.7 164 57.3
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 9.5e-50 200.7 164 57.3
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.2e-49 200.3 164 57.9
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 1.2e-49 200.3 150 67.3
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 2.1e-49 199.5 158 62.0
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 2.1e-49 199.5 164 58.5
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 3.6e-49 198.7 162 57.4
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 3.6e-49 198.7 162 57.4
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 3.6e-49 198.7 165 55.8
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 4.7e-49 198.4 165 56.4
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.1e-48 197.2 165 55.8
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 3.1e-48 195.7 166 56.0
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 4.0e-48 195.3 164 57.3
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 1.2e-47 193.7 170 52.9
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 2.6e-47 192.6 167 56.3
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.4e-47 192.2 164 56.1
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 3.4e-47 192.2 173 61.3
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.4e-47 192.2 169 53.3
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 7.5e-47 191.0 170 55.9
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 4.9e-46 188.3 180 51.7
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 1.1e-45 187.2 171 50.9
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.1e-45 187.2 135 63.7
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.9e-45 186.4 164 54.3
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 3.2e-45 185.7 170 52.4
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 3.2e-45 185.7 169 52.1
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 2.0e-44 183.0 171 50.3
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 6.0e-44 181.4 165 53.9
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.3e-43 180.3 167 51.5
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 3.9e-43 178.7 171 49.7
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 1.1e-42 177.2 171 48.5
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.5e-42 176.0 167 50.9
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 4.3e-42 175.3 171 49.7
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 1.2e-41 173.7 234 42.7
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 8.1e-41 171.0 168 50.0
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 1.8e-40 169.9 168 51.8
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 3.1e-40 169.1 173 45.7
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 4.0e-40 168.7 168 46.4
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 8.9e-40 167.5 165 48.5
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 1.2e-39 167.2 165 50.3
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 2.6e-39 166.0 166 50.6
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 9.9e-39 164.1 168 45.8
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 1.3e-38 163.7 173 44.5
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.7e-38 163.3 168 45.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 2.9e-38 162.5 167 47.3
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 3.7e-38 162.2 144 52.1
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 3.7e-38 162.2 168 48.8
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 4.9e-38 161.8 171 49.7
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 4.9e-38 161.8 165 46.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 8.3e-38 161.0 170 42.9
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.4e-37 160.2 168 47.6
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 1.9e-37 159.8 168 46.4
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 1.9e-37 159.8 168 47.0
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 4.1e-37 158.7 132 62.9
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.6e-36 156.8 169 48.5
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 7.8e-36 154.5 198 42.4
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 1.7e-35 153.3 168 45.2
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 2.5e-34 149.4 137 51.8
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.2e-33 147.1 166 44.6
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.7e-30 136.7 93 74.2
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 6.4e-30 134.8 94 71.3
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 3.2e-29 132.5 137 48.2
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.6e-25 120.2 93 65.6
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 4.4e-23 112.1 77 67.5
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 5.8e-23 111.7 81 65.4
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 8.4e-22 107.8 295 27.5
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 6.6e-19 98.2 170 30.6
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 3.3e-18 95.9 166 29.5
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 1.1e-16 90.9 197 26.9
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 1.5e-15 87.0 165 27.3
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.6e-15 86.3 166 27.7
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 2.6e-15 86.3 166 27.1
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 3.4e-15 85.9 166 28.3
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 3.4e-15 85.9 167 29.9
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 3.4e-15 85.9 166 28.3
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 9.9e-15 84.3 166 27.1
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.3e-14 84.0 166 27.7
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.3e-14 84.0 166 27.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.3e-14 84.0 166 26.5
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 1.3e-14 84.0 166 27.7
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.7e-14 83.6 166 27.1
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.7e-14 83.6 166 28.9
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 2.2e-14 83.2 166 27.7
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 2.2e-14 83.2 166 28.3
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.2e-14 83.2 166 25.9
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.2e-14 83.2 166 27.1
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 2.2e-14 83.2 166 27.1
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 2.9e-14 82.8 166 27.7
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.9e-14 82.8 166 27.1
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 3.8e-14 82.4 166 27.1
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 4.9e-14 82.0 166 27.1
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 4.9e-14 82.0 166 27.1
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 4.9e-14 82.0 166 26.5
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 6.4e-14 81.6 166 27.1
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 6.4e-14 81.6 166 28.3
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 8.4e-14 81.3 166 26.5
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.1e-13 80.9 166 26.5
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.1e-13 80.9 166 26.5
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.1e-13 80.9 166 26.5
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.1e-13 80.9 166 26.5
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 1.9e-13 80.1 166 26.5
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.9e-13 80.1 166 26.5
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 2.4e-13 79.7 166 25.9
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 2.4e-13 79.7 88 44.3
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 2.4e-13 79.7 167 26.3
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 3.2e-13 79.3 160 28.1
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 3.2e-13 79.3 166 25.9
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 3.2e-13 79.3 166 27.1
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 3.2e-13 79.3 81 46.9
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 5.4e-13 78.6 166 26.5
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 5.4e-13 78.6 166 25.9
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 5.4e-13 78.6 166 24.1
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 7.1e-13 78.2 166 26.5
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 7.1e-13 78.2 166 27.1
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 9.3e-13 77.8 166 25.3
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 9.3e-13 77.8 166 26.5
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 1.2e-12 77.4 166 26.5
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.2e-12 77.4 168 28.0
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 1.2e-12 77.4 166 25.9
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 1.6e-12 77.0 166 24.7
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 2.1e-12 76.6 166 25.3
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 2.1e-12 76.6 166 25.3
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 3.5e-12 75.9 166 25.3
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 3.5e-12 75.9 164 26.8
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.6e-12 75.5 168 26.8
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 4.6e-12 75.5 164 26.2
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 4.6e-12 75.5 165 26.1
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 6.0e-12 75.1 166 25.3
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-11 74.3 166 24.7
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-11 74.3 166 24.7
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-11 74.3 166 24.7
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.0e-11 74.3 168 26.8
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.0e-11 74.3 168 26.8
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 1.0e-11 74.3 165 24.2
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 1.3e-11 73.9 166 24.1
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.8e-11 73.6 167 26.9
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.3e-11 73.2 178 24.7
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.9e-11 72.4 162 27.2
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 8.7e-11 71.2 187 26.2
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 1.5e-10 70.5 174 24.7
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 3.3e-10 69.3 190 23.2
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 9.6e-10 67.8 165 24.8
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 9.6e-10 67.8 166 23.5
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 9.6e-10 67.8 166 25.9
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.6e-09 67.0 166 23.5
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.6e-09 67.0 182 23.6
CSS0038024 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D001339 9.0e-08 61.2 42 66.7
CSS0001325 Camellia sinensis var. sinensis HOM05D007418 ORTHO05D009419 1.5e-07 60.5 45 60.0
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 2.0e-07 60.1 128 26.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 3.8e-06 55.8 123 26.0
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 8.4e-06 54.7 104 28.8


User provided reference genes

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