Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 6.9e-19 96.3 48 100.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.1e-16 89.0 47 91.5
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 4.6e-15 83.6 48 85.4
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 4.0e-11 70.5 46 73.9
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 6.9e-11 69.7 47 68.1
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.0e-10 68.2 47 68.1
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.6e-10 67.8 47 66.0
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.6e-10 67.8 47 66.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 7.6e-10 66.2 46 67.4
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.2e-09 64.7 47 63.8
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.9e-09 64.3 46 69.6
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.9e-09 63.5 47 68.1
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.9e-09 63.5 47 66.0
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.1e-08 62.4 42 73.8
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.1e-08 62.4 47 61.7
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.4e-08 62.0 47 63.8
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.4e-08 62.0 47 68.1
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.9e-08 61.6 42 73.8
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.2e-08 60.8 42 71.4
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.2e-08 60.5 47 61.7
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.2e-08 60.5 46 65.2
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.5e-08 60.1 42 71.4
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 5.5e-08 60.1 42 69.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 5.5e-08 60.1 47 66.0
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.5e-08 60.1 47 63.8
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 7.1e-08 59.7 46 67.4
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.1e-08 59.7 42 71.4
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 7.1e-08 59.7 42 69.0
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 9.3e-08 59.3 47 63.8
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 9.3e-08 59.3 46 63.0
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 9.3e-08 59.3 47 61.7
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.2e-07 58.9 47 61.7
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.2e-07 58.9 47 61.7
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.2e-07 58.9 47 61.7
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.2e-07 58.9 47 63.8
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.2e-07 58.9 47 63.8
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.2e-07 58.9 42 71.4
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.6e-07 58.5 42 71.4
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.6e-07 58.5 46 65.2
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.6e-07 58.5 47 63.8
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.1e-07 58.2 47 59.6
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.1e-07 58.2 47 61.7
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 3.5e-07 57.4 47 57.4
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 3.5e-07 57.4 46 63.0
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 3.5e-07 57.4 47 57.4
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.6e-07 57.0 47 59.6
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 6.0e-07 56.6 47 61.7
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 6.0e-07 56.6 46 63.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.0e-07 56.6 42 64.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 7.9e-07 56.2 42 64.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.9e-07 56.2 42 64.3
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 7.9e-07 56.2 42 69.0
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 7.9e-07 56.2 43 60.5
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 7.9e-07 56.2 47 63.8
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.0e-06 55.8 42 64.3
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.0e-06 55.8 42 66.7
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.3e-06 55.5 47 57.4
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.8e-06 55.1 42 64.3
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 2.3e-06 54.7 47 55.3
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.3e-06 54.7 47 55.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.3e-06 54.7 47 55.3
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.3e-06 54.7 47 55.3
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.3e-06 54.7 47 55.3
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.3e-06 54.7 42 64.3
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.0e-06 54.3 42 59.5
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.9e-06 53.9 46 63.0
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.9e-06 53.9 33 72.7
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 3.9e-06 53.9 47 59.6
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.1e-06 53.5 47 55.3
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.1e-06 53.5 42 66.7
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.1e-06 53.5 42 64.3
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 6.7e-06 53.1 42 64.3
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 6.7e-06 53.1 46 60.9
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 8.7e-06 52.8 47 59.6
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 8.7e-06 52.8 42 59.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.7e-06 52.8 47 55.3
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.7e-06 52.8 47 55.3


User provided reference genes

Program Settings