Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 2.8e-231 805.1 442 100.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 4.9e-188 661.4 392 83.2
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.2e-186 656.8 392 81.6
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.3e-184 648.7 392 80.1
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.3e-183 646.7 392 80.9
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 4.8e-183 644.8 392 80.6
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 8.2e-183 644.0 392 80.4
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.4e-182 642.5 392 78.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 5.3e-182 641.3 392 79.8
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.2e-181 640.2 392 79.6
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.0e-180 637.1 392 79.3
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.3e-180 636.7 392 78.8
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 8.4e-180 634.0 391 78.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 3.2e-179 632.1 390 78.2
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 5.5e-179 631.3 392 78.6
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 5.5e-179 631.3 392 78.8
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 7.1e-179 630.9 389 79.4
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 9.3e-179 630.6 392 78.1
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.2e-178 630.2 392 78.6
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.1e-178 629.4 392 77.6
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.7e-178 629.0 391 78.3
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.7e-178 629.0 390 77.9
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 4.6e-178 628.2 392 78.3
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.8e-177 626.3 392 77.8
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.8e-177 626.3 390 77.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.9e-177 625.2 390 77.4
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 8.7e-177 624.0 389 77.9
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.9e-176 622.9 392 76.8
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 3.3e-176 622.1 392 77.6
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 3.3e-176 622.1 392 77.3
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.3e-176 622.1 392 76.8
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 4.3e-176 621.7 392 77.0
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 5.7e-176 621.3 392 77.0
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 7.4e-176 620.9 393 77.1
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.3e-175 620.2 444 70.7
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-175 619.8 392 76.8
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-175 619.8 392 76.8
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.2e-175 619.4 393 76.8
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.2e-175 619.4 403 75.9
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.7e-175 618.6 392 76.0
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 3.7e-175 618.6 392 76.0
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 3.7e-175 618.6 392 77.6
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 2.4e-174 615.9 429 72.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.4e-174 615.9 392 75.8
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 3.1e-174 615.5 392 75.3
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 5.3e-174 614.8 394 77.4
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 6.9e-174 614.4 391 75.2
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 6.9e-174 614.4 442 69.0
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.0e-173 612.8 373 80.4
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 7.7e-173 610.9 373 80.2
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.0e-172 610.5 392 75.3
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.0e-172 610.5 391 75.4
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.7e-172 609.8 414 72.7
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 2.2e-172 609.4 392 74.7
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 2.2e-172 609.4 392 74.2
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 5.0e-172 608.2 391 74.7
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 8.5e-172 607.4 392 76.0
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 4.2e-171 605.1 392 74.2
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 5.5e-171 604.7 392 75.3
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 9.4e-171 604.0 392 75.5
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 4.6e-170 601.7 392 73.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 6.1e-170 601.3 392 74.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 7.9e-170 600.9 392 73.7
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-169 599.7 392 74.0
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.3e-169 599.4 392 74.2
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 3.0e-169 599.0 392 73.7
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 3.0e-169 599.0 392 74.0
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.3e-168 595.5 426 70.7
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 4.3e-168 595.1 392 73.5
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 7.4e-168 594.3 392 74.0
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.7e-167 592.0 392 74.2
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.2e-164 582.8 407 72.7
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.9e-164 582.4 392 71.7
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.0e-164 581.6 392 73.0
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 5.0e-164 581.6 392 73.0
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.9e-163 579.7 392 73.0
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.9e-163 579.7 392 73.0
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.0e-161 573.9 373 75.9
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.9e-161 572.0 389 73.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 5.1e-161 571.6 390 71.0
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 8.2e-159 564.3 387 70.3
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 7.0e-158 561.2 346 80.6
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 9.1e-158 560.8 392 71.4
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 3.8e-156 555.4 392 68.1
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.9e-155 553.1 539 56.8
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 9.4e-155 550.8 393 67.9
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.7e-154 549.3 346 77.2
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.0e-153 547.4 425 65.9
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 3.0e-153 545.8 391 69.6
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.0e-152 543.1 346 76.9
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 7.4e-152 541.2 346 77.5
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 5.9e-149 531.6 332 78.0
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 5.0e-148 528.5 372 71.5
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 2.2e-143 513.1 389 67.9
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.7e-143 512.3 344 71.5
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 5.0e-140 501.9 355 70.7
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.2e-138 497.3 391 60.9
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.0e-137 492.7 379 63.6
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 5.2e-137 491.9 373 63.5
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.6e-136 489.6 338 68.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 6.3e-135 485.0 381 61.9
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 6.3e-135 485.0 297 80.5
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.4e-126 457.2 373 63.8
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.8e-126 456.8 334 67.4
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.1e-121 439.5 298 73.5
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.2e-117 427.6 315 71.7
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 8.0e-114 414.8 369 55.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 6.4e-111 405.2 266 75.9
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.6e-108 395.2 262 73.7
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.1e-105 386.3 277 71.1
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 4.1e-102 375.9 316 60.8
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.5e-99 367.5 405 47.9
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 1.9e-99 367.1 323 60.4
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.5e-96 357.5 230 75.2
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.7e-92 344.0 373 49.6
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.9e-91 340.5 399 45.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.3e-66 258.1 170 71.2
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.4e-62 244.6 254 52.0
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 5.1e-60 236.1 221 59.3
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 8.8e-52 208.8 129 75.2
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-51 207.2 139 72.7
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.1e-49 201.8 338 33.4
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.4e-49 201.4 143 68.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.7e-47 194.5 122 73.8
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-46 190.7 167 56.3
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 4.0e-36 156.8 139 59.7
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.2e-30 137.1 419 31.5
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 8.3e-26 122.5 95 65.3
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.1e-25 122.1 101 65.3
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 5.5e-22 109.8 84 63.1
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 8.0e-21 105.9 68 80.9
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.2e-20 103.2 64 71.9
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.2e-14 82.8 68 61.8
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.0e-12 77.4 62 59.7
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.4e-11 73.9 66 57.6
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 7.0e-09 66.2 49 65.3
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 2.7e-08 64.3 66 45.5
CBR_g38900 Chara braunii HOM05D021006 ORTHO05D024937 1.0e-07 62.4 144 29.9
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 1.7e-07 61.6 45 62.2
CBR_g38904 Chara braunii HOM05D021006 ORTHO05D024937 2.3e-07 61.2 144 29.2
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.5e-06 55.8 37 70.3


User provided reference genes

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