Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g01690 Coffea canephora HOM05D001965 ORTHO05D002112 1.4e-14 81.6 37 100.0
Cc00_g15310 Coffea canephora HOM05D001965 ORTHO05D002112 3.9e-14 80.1 37 97.3
Cc00_g26660 Coffea canephora HOM05D001965 ORTHO05D002112 8.2e-12 72.4 37 89.2
Cc00_g21420 Coffea canephora HOM05D001965 ORTHO05D002112 4.1e-11 70.1 32 96.9
Cc01_g01650 Coffea canephora HOM05D001965 ORTHO05D002112 4.1e-11 70.1 32 96.9
Duzib052G0562 Durio zibethinus HOM05D001965 ORTHO05D002112 7.7e-10 65.9 32 87.5
Gohir.A02G047900 Gossypium hirsutum HOM05D001965 ORTHO05D002112 7.7e-10 65.9 32 87.5
Gohir.D02G053000 Gossypium hirsutum HOM05D001965 ORTHO05D002112 1.0e-09 65.5 31 87.1
Gorai.005G058900 Gossypium raimondii HOM05D001965 ORTHO05D002112 1.0e-09 65.5 31 87.1
Sc15g0003700 Simmondsia chinensis HOM05D001965 ORTHO05D002112 2.9e-09 63.9 32 84.4
MELO3C006642.2 Cucumis melo HOM05D001965 ORTHO05D002112 5.0e-09 63.2 32 84.4
CsaV3_3G014420 Cucumis sativus L. HOM05D001965 ORTHO05D002112 5.0e-09 63.2 32 84.4
Dinv38307 Davidia involucrata HOM05D001965 ORTHO05D002112 5.0e-09 63.2 32 87.5
Dinv44401 Davidia involucrata HOM05D001965 ORTHO05D002112 5.0e-09 63.2 32 87.5
Manes.15G014400 Manihot esculenta HOM05D001965 ORTHO05D002112 5.0e-09 63.2 32 84.4
AL3G35510 Arabidopsis lyrata HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
AT3G21430 Arabidopsis thaliana HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
BcaC05g28163 Brassica carinata HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
A05p27210 Brassica napus HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
C05p41990 Brassica napus HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
BolC5t32933H Brassica oleracea HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
BraA05t21610Z Brassica rapa HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
Carub.0003s2146 Capsella rubella HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
CARHR097400 Cardamine hirsuta HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
Cpa.g.sc16.152 Carica papaya HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 84.4
Ciclev10004186m.g Citrus clementina HOM05D001965 ORTHO05D002112 6.5e-09 62.8 31 87.1
Haze_01238 Corylus avellana HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 84.4
Thhalv10019941m.g Eutrema salsugineum HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
Sp3g19450 Schrenkiella parvula HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 81.2
GSVIVG01017770001 Vitis vinifera HOM05D001965 ORTHO05D002112 6.5e-09 62.8 32 84.4
Hma1.2p1_2865F.1_g329610 Hydrangea macrophylla HOM05D001965 ORTHO05D002112 8.5e-09 62.4 32 84.4
Migut.N00106 Erythranthe guttata HOM05D001965 ORTHO05D002112 1.1e-08 62.0 32 87.5
Oeu029259.3 Olea europaea HOM05D001965 ORTHO05D002112 1.1e-08 62.0 32 84.4
Potri.010G023201 Populus trichocarpa HOM05D001965 ORTHO05D002112 1.1e-08 62.0 32 84.4
QL06p008270 Quercus lobata HOM05D001965 ORTHO05D002112 1.1e-08 62.0 31 80.6
Atru.chr4.2799 Acer truncatum HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 81.2
EL10Ac3g06584 Beta vulgaris HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 78.1
CiPaw.01G150700 Carya illinoinensis HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 81.2
Peaxi162Scf00205g00120 Petunia axillaris HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 84.4
Peaxi162Scf00386g00415 Petunia axillaris HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 84.4
Rhsim04G0219400 Rhododendron simsii HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 81.2
Sabra10G0015400 Salix brachista HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 84.4
vmacro08123 Vaccinium macrocarpon HOM05D001965 ORTHO05D002112 1.4e-08 61.6 32 81.2
Actinidia40249 Actinidia chinensis HOM05D001965 ORTHO05D002112 1.9e-08 61.2 31 80.6
TWI53G1978 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 1.9e-08 61.2 32 84.4
CAN.G580.4 Capsicum annuum HOM05D001965 ORTHO05D002112 2.5e-08 60.8 32 81.2
Thecc.04G280900 Theobroma cacao HOM05D001965 ORTHO05D002112 2.5e-08 60.8 32 81.2
Aa31LG8G8130 Aethionema arabicum HOM05D001965 ORTHO05D002112 3.2e-08 60.5 32 81.2
AUR62040383 Chenopodium quinoa HOM05D001965 ORTHO05D002112 3.2e-08 60.5 34 73.5
Nn4g25956 Nelumbo nucifera HOM05D001965 ORTHO05D002112 3.2e-08 60.5 32 78.1
CSS0042119 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 4.2e-08 60.1 32 78.1
COL.COLO4_13902 Corchorus olitorius HOM05D001965 ORTHO05D002112 5.5e-08 59.7 32 81.2
Oeu002611.1 Olea europaea HOM05D001965 ORTHO05D002112 5.5e-08 59.7 32 78.1
PGR004G1216 Punica granatum HOM05D001965 ORTHO05D002112 7.2e-08 59.3 31 80.6
TWI73G0495 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 7.2e-08 59.3 32 81.2
BcaB06g26245 Brassica carinata HOM05D001965 ORTHO05D002112 9.4e-08 58.9 29 82.8
Sabra08G0154900 Salix brachista HOM05D001965 ORTHO05D002112 9.4e-08 58.9 32 78.1
CSS0007405 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 1.2e-07 58.5 32 84.4
CSS0031262 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 1.2e-07 58.5 32 84.4
FvH4_4g17660 Fragaria vesca HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
FAN07G1913 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
FAN12G2891 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
FAN12G3732 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
FAN17G1019 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
FAN22G0525 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
Hma1.2p1_0698F.1_g205350 Hydrangea macrophylla HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 78.1
MD16G1172500 Malus domestica HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
MD16G1172600 Malus domestica HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
Nn3g21366 Nelumbo nucifera HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 75.0
RcHm_v2.0_Chr4g0421601 Rosa chinensis HOM05D001965 ORTHO05D002112 1.6e-07 58.2 32 81.2
Lj4g0021619 Lotus japonicus HOM05D001965 ORTHO05D002112 2.7e-07 57.4 32 78.1
Sed0023895 Sechium edule HOM05D001965 ORTHO05D002112 2.7e-07 57.4 32 78.1
TWI12G0026 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 2.7e-07 57.4 32 75.0
Nitab4.5_0000784g0110 Nicotiana tabacum HOM05D001965 ORTHO05D002112 3.6e-07 57.0 30 73.3
Nitab4.5_0003147g0060 Nicotiana tabacum HOM05D001965 ORTHO05D002112 3.6e-07 57.0 30 73.3
Potri.013G020500 Populus trichocarpa HOM05D001965 ORTHO05D002112 3.6e-07 57.0 32 75.0
Prupe.1G139300 Prunus persica HOM05D001965 ORTHO05D002112 3.6e-07 57.0 32 78.1
Sabra13G0023000 Salix brachista HOM05D001965 ORTHO05D002112 3.6e-07 57.0 32 75.0
THA.LOC104802553 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 3.6e-07 57.0 32 75.0
THA.LOC104821767 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 3.6e-07 57.0 32 75.0
Actinidia00042 Actinidia chinensis HOM05D001965 ORTHO05D002112 4.7e-07 56.6 32 78.1
Duzib212G0636 Durio zibethinus HOM05D001965 ORTHO05D002112 4.7e-07 56.6 32 75.0
Lalb_Chr15g0077241 Lupinus albus HOM05D001965 ORTHO05D002112 4.7e-07 56.6 31 77.4
Manes.09G168000 Manihot esculenta HOM05D001965 ORTHO05D002112 4.7e-07 56.6 31 77.4
Phvul.003G103001 Phaseolus vulgaris HOM05D001965 ORTHO05D002112 4.7e-07 56.6 32 78.1
Phvul.007G179500 Phaseolus vulgaris HOM05D001965 ORTHO05D002112 4.7e-07 56.6 31 77.4
Potri.005G029000 Populus trichocarpa HOM05D001965 ORTHO05D002112 4.7e-07 56.6 31 77.4
Sabra05G0033800 Salix brachista HOM05D001965 ORTHO05D002112 4.7e-07 56.6 31 77.4
VMungo0720G2192 Vigna mungo HOM05D001965 ORTHO05D002112 4.7e-07 56.6 31 77.4
VMungo1215G2815 Vigna mungo HOM05D001965 ORTHO05D002112 4.7e-07 56.6 32 78.1
arahy.Tifrunner.gnm1.ann1.5EJH8A Arachis hypogaea HOM05D001965 ORTHO05D002112 6.1e-07 56.2 32 78.1
arahy.Tifrunner.gnm1.ann1.R7AZQJ Arachis hypogaea HOM05D001965 ORTHO05D002112 6.1e-07 56.2 32 78.1
Cfa006601 Carpinus fangiana HOM05D001965 ORTHO05D002112 6.1e-07 56.2 31 74.2
Haze_04176 Corylus avellana HOM05D001965 ORTHO05D002112 6.1e-07 56.2 31 74.2
Dinv30775 Davidia involucrata HOM05D001965 ORTHO05D002112 6.1e-07 56.2 31 74.2
Dinv40302 Davidia involucrata HOM05D001965 ORTHO05D002112 6.1e-07 56.2 31 74.2
Gohir.A11G295300 Gossypium hirsutum HOM05D001965 ORTHO05D002112 6.1e-07 56.2 30 76.7
Gohir.D11G311600 Gossypium hirsutum HOM05D001965 ORTHO05D002112 6.1e-07 56.2 30 76.7
Gorai.007G342200 Gossypium raimondii HOM05D001965 ORTHO05D002112 6.1e-07 56.2 30 76.7
Medtr4g119390 Medicago truncatula HOM05D001965 ORTHO05D002112 6.1e-07 56.2 32 78.1
PSO170G4751 Papaver somniferum HOM05D001965 ORTHO05D002112 6.1e-07 56.2 31 74.2
Potri.008G216600 Populus trichocarpa HOM05D001965 ORTHO05D002112 6.1e-07 56.2 32 78.1
Sed0011069 Sechium edule HOM05D001965 ORTHO05D002112 6.1e-07 56.2 32 78.1
TWI56G1184 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 6.1e-07 56.2 32 71.9
TAR365G0296 Trochodendron aralioides HOM05D001965 ORTHO05D002112 6.1e-07 56.2 32 75.0
ECA233G3126 Erigeron canadensis HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 75.0
Lj5g0019884 Lotus japonicus HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 71.9
Lalb_Chr07g0177631 Lupinus albus HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 75.0
Psat4g027800 Pisum sativum HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 75.0
SalBow5G3642 Salvia bowleyana HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 81.2
Solyc01g067560.3 Solanum lycopersicum HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 71.9
Sopen01g029510 Solanum pennellii HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 71.9
SGA_v2.0_scaffold55G19697 Striga asiatica HOM05D001965 ORTHO05D002112 7.9e-07 55.8 32 81.2
Actinidia23652 Actinidia chinensis HOM05D001965 ORTHO05D002112 1.0e-06 55.5 30 70.0
Glyma.20G234500 Glycine max HOM05D001965 ORTHO05D002112 1.0e-06 55.5 31 74.2
Atru.chr2.365 Acer truncatum HOM05D001965 ORTHO05D002112 1.4e-06 55.1 30 73.3
Actinidia05684 Actinidia chinensis HOM05D001965 ORTHO05D002112 1.4e-06 55.1 30 70.0
CiPaw.07G018900 Carya illinoinensis HOM05D001965 ORTHO05D002112 1.4e-06 55.1 31 74.2
Ciclev10000065m.g Citrus clementina HOM05D001965 ORTHO05D002112 1.4e-06 55.1 30 73.3
PSO063G4118 Papaver somniferum HOM05D001965 ORTHO05D002112 1.4e-06 55.1 31 71.0
PSO210G6282 Papaver somniferum HOM05D001965 ORTHO05D002112 1.4e-06 55.1 32 68.8
Solyc12g098160.2 Solanum lycopersicum HOM05D001965 ORTHO05D002112 1.4e-06 55.1 32 71.9
Sopen12g032990 Solanum pennellii HOM05D001965 ORTHO05D002112 1.4e-06 55.1 32 71.9
Ah.04g160350 Amaranthus hybridus HOM05D001965 ORTHO05D002112 1.8e-06 54.7 31 71.0
CSS0013812 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 1.8e-06 54.7 31 71.0
Duzib177G0446 Durio zibethinus HOM05D001965 ORTHO05D002112 1.8e-06 54.7 30 73.3
Aqoxy2G03054 Aquilegia oxysepala HOM05D001965 ORTHO05D002112 2.3e-06 54.3 32 71.9
CAN.G706.19 Capsicum annuum HOM05D001965 ORTHO05D002112 3.0e-06 53.9 32 75.0
Rhsim07G0186200 Rhododendron simsii HOM05D001965 ORTHO05D002112 3.0e-06 53.9 31 71.0
CDE04G0492 Ceratophyllum demersum HOM05D001965 ORTHO05D002112 3.9e-06 53.5 31 71.0
CDE07G1274 Ceratophyllum demersum HOM05D001965 ORTHO05D002112 3.9e-06 53.5 31 71.0
Lsat_1_v5_gn_6_15141 Lactuca sativa HOM05D001965 ORTHO05D002112 3.9e-06 53.5 32 75.0
MBI19_g04331_MAGBIO Magnolia biondii HOM05D001965 ORTHO05D002112 3.9e-06 53.5 32 75.0
SGA_v2.0_scaffold86G26906 Striga asiatica HOM05D001965 ORTHO05D002112 3.9e-06 53.5 32 75.0
EL10Ac4g09373 Beta vulgaris HOM05D001965 ORTHO05D002112 5.1e-06 53.1 31 71.0
AUR62000808 Chenopodium quinoa HOM05D001965 ORTHO05D002112 5.1e-06 53.1 31 71.0
Glyma.07G249800 Glycine max HOM05D001965 ORTHO05D002112 5.1e-06 53.1 32 78.1
Cpa.g.sc48.70 Carica papaya HOM05D001965 ORTHO05D002112 6.7e-06 52.8 32 71.9
Lj1g0025505 Lotus japonicus HOM05D001965 ORTHO05D002112 6.7e-06 52.8 31 74.2
MSTRG.3934 Avicennia marina HOM05D001965 ORTHO05D002112 8.8e-06 52.4 32 75.0
Glyma.10G153800 Glycine max HOM05D001965 ORTHO05D002112 8.8e-06 52.4 31 71.0
Thecc.05G310000 Theobroma cacao HOM05D001965 ORTHO05D002112 8.8e-06 52.4 31 74.2
unitig_37.g12390 Utricularia gibba HOM05D001965 ORTHO05D002112 8.8e-06 52.4 32 75.0
unitig_46.g18686 Utricularia gibba HOM05D001965 ORTHO05D002112 8.8e-06 52.4 32 71.9


User provided reference genes

Program Settings