Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 4.3e-286 987.3 485 100.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.7e-219 765.4 491 76.8
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.7e-219 765.4 490 76.7
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.8e-218 761.5 491 76.6
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 5.6e-217 757.7 491 76.2
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 7.3e-217 757.3 491 76.4
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.6e-216 756.1 491 75.2
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 8.0e-216 753.8 488 74.8
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 9.8e-214 746.9 491 74.3
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.3e-213 746.5 491 75.6
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.7e-213 746.1 491 74.3
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 3.7e-213 745.0 491 74.5
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 4.9e-213 744.6 492 75.4
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 4.9e-213 744.6 457 78.1
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 4.9e-213 744.6 491 74.1
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 4.9e-213 744.6 492 73.4
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.8e-212 742.7 488 75.6
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.4e-212 742.3 450 78.9
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.4e-212 742.3 491 73.9
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 4.1e-212 741.5 490 76.3
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.4e-212 741.1 496 74.0
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 4.6e-211 738.0 489 73.6
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 7.8e-211 737.3 452 78.3
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 3.0e-210 735.3 487 75.2
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 3.0e-210 735.3 491 73.7
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 3.3e-209 731.9 450 76.7
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 9.5e-209 730.3 490 74.5
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.8e-208 728.8 489 73.4
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 4.7e-208 728.0 533 68.9
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 6.2e-208 727.6 490 73.7
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 8.0e-208 727.2 491 73.1
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.4e-207 726.5 491 74.5
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.8e-207 726.1 427 79.4
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.2e-206 723.4 486 73.0
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.5e-206 723.0 503 71.8
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.0e-206 722.6 490 73.5
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.0e-206 722.6 494 72.7
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.7e-205 719.5 492 73.4
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 3.7e-205 718.4 491 72.1
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 8.3e-205 717.2 486 72.0
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.4e-204 716.5 489 72.4
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.4e-204 716.5 425 78.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.9e-204 716.1 488 71.1
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 3.2e-204 715.3 486 71.0
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 4.1e-204 714.9 485 71.1
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 4.1e-204 714.9 485 71.1
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 4.1e-204 714.9 522 67.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 5.4e-204 714.5 494 70.4
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 7.0e-204 714.1 526 69.4
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 7.0e-204 714.1 424 78.1
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.2e-203 713.4 492 70.7
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.0e-203 712.6 491 70.5
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 2.7e-203 712.2 497 72.4
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 3.5e-203 711.8 427 80.3
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 4.6e-203 711.4 490 72.0
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 6.0e-203 711.1 432 77.5
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 7.8e-203 710.7 486 71.2
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.0e-202 710.3 476 71.6
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.0e-202 710.3 486 71.2
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.3e-202 709.9 491 73.1
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.7e-202 709.5 442 76.9
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.3e-202 709.1 485 71.1
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.3e-202 709.1 485 71.1
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 3.9e-202 708.4 471 71.8
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.9e-202 708.4 487 71.3
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 1.5e-201 706.4 432 76.2
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 5.6e-201 704.5 432 77.1
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 5.6e-201 704.5 447 75.2
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 5.6e-201 704.5 492 70.1
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 9.5e-201 703.7 483 72.3
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.2e-200 703.4 473 73.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.1e-200 702.6 447 74.7
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.1e-200 702.6 489 70.3
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 6.2e-200 701.0 422 78.9
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 5.2e-199 698.0 425 77.6
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.4e-198 695.3 495 70.5
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 3.4e-198 695.3 486 70.2
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.4e-198 694.9 432 75.9
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.2e-197 692.6 424 76.7
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 8.3e-197 690.6 456 72.6
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.1e-196 688.3 436 74.8
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 5.4e-196 688.0 426 75.8
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.3e-194 682.6 424 76.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 6.6e-194 681.0 490 70.6
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 2.5e-193 679.1 444 73.2
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 2.3e-191 672.5 401 77.8
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.8e-189 665.2 402 77.4
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 7.3e-185 651.0 493 65.9
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.2e-184 650.2 374 81.3
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.8e-184 649.0 405 75.1
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 6.2e-184 647.9 456 71.9
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.4e-182 641.7 461 68.3
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 8.4e-181 637.5 374 78.9
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 2.3e-178 629.4 490 67.1
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.3e-178 629.4 547 60.9
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 5.8e-174 614.8 451 68.5
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.3e-173 613.6 502 61.8
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-173 613.2 410 71.2
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 6.4e-173 611.3 437 67.0
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 6.0e-171 604.7 478 64.2
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 2.5e-169 599.4 393 71.8
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.1e-167 592.4 446 63.7
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 2.6e-166 589.3 390 72.6
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 9.9e-166 587.4 374 74.6
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.1e-163 579.7 502 60.8
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.6e-160 570.1 340 78.2
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.1e-159 567.4 399 68.7
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.5e-158 563.5 506 54.5
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 3.7e-152 542.3 433 62.1
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 1.0e-146 524.2 381 68.5
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 4.3e-145 518.8 452 55.8
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.3e-141 507.3 326 75.8
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 9.7e-121 438.0 256 78.9
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 5.0e-117 425.6 293 69.6
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 5.0e-117 425.6 293 69.6
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 4.8e-112 409.1 391 52.4
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.9e-108 397.1 291 66.0
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.7e-104 384.0 281 66.2
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 6.3e-104 382.1 266 69.9
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 5.9e-102 375.6 290 64.8
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.3e-101 374.4 344 55.5
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.5e-100 370.9 260 68.8
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 4.0e-90 336.3 383 46.5
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.6e-86 324.3 208 73.6
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.7e-80 303.1 239 69.5
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 6.2e-75 285.8 331 44.1
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 8.7e-69 265.4 580 31.7
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.1e-68 265.0 249 53.8
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.6e-54 218.0 462 33.3
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 5.5e-47 193.0 110 80.9
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 6.9e-42 176.0 110 78.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.6e-35 154.8 129 58.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 2.6e-33 147.5 94 74.5
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 9.4e-31 139.0 109 59.6
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.2e-22 112.1 74 74.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 2.4e-18 97.8 60 65.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 4.1e-18 97.1 65 66.2
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 4.1e-18 97.1 65 66.2
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 5.3e-18 96.7 65 66.2
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 7.0e-18 96.3 64 67.2
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.0e-17 94.7 66 63.6
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 2.0e-17 94.7 65 64.6
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 2.6e-17 94.4 65 66.2
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 3.5e-17 94.0 65 63.1
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 3.5e-17 94.0 62 67.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 4.5e-17 93.6 64 64.1
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 5.9e-17 93.2 65 63.1
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 1.7e-16 91.7 53 71.7
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 8.0e-14 82.8 69 63.8
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 2.6e-12 77.8 63 68.3
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 4.1e-10 70.5 84 47.6
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 5.0e-08 63.5 45 68.9
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 1.6e-06 58.5 57 57.9


User provided reference genes

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