Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.1e-278 962.6 483 100.0
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 7.5e-198 694.1 467 72.4
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 1.3e-194 683.3 461 70.9
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.0e-194 682.2 485 69.5
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 3.0e-194 682.2 482 68.3
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 1.1e-193 680.2 457 70.0
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.9e-193 679.5 457 72.4
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.5e-193 679.1 464 71.1
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 6.8e-191 671.0 478 68.4
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 1.5e-190 669.8 467 68.1
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 9.8e-190 667.2 482 66.8
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.2e-187 660.2 452 68.6
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.6e-187 659.8 456 70.2
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 2.7e-187 659.1 457 69.8
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.0e-186 657.1 452 67.9
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-186 656.4 481 65.7
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 2.3e-186 656.0 488 65.6
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.0e-186 655.6 481 65.3
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 5.0e-186 654.8 478 67.8
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.1e-185 653.7 481 65.7
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 9.5e-185 650.6 457 68.9
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 2.1e-184 649.4 452 67.9
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 3.6e-184 648.7 452 67.0
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 6.2e-184 647.9 481 64.7
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.3e-183 646.0 481 65.7
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 3.1e-183 645.6 481 63.8
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 5.2e-183 644.8 449 66.6
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 1.3e-181 640.2 452 67.5
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.7e-181 639.8 481 64.4
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.2e-181 639.4 468 65.2
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 2.9e-181 639.0 482 66.2
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.4e-180 636.7 486 64.8
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 2.7e-179 632.5 459 67.3
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 6.0e-179 631.3 452 67.3
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.7e-178 629.8 449 65.9
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 2.5e-177 625.9 456 66.4
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 2.8e-176 622.5 454 65.9
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 4.0e-175 618.6 456 65.8
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 8.9e-175 617.5 481 63.6
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 3.4e-174 615.5 482 63.3
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 5.8e-174 614.8 452 66.2
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 4.9e-173 611.7 481 62.0
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 6.4e-173 611.3 455 64.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-172 610.1 455 64.2
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 1.4e-172 610.1 452 65.5
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 4.2e-172 608.6 482 61.8
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 4.2e-172 608.6 452 63.3
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 7.1e-172 607.8 486 62.6
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 2.7e-171 605.9 451 65.4
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 6.0e-171 604.7 460 63.7
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 6.0e-171 604.7 449 65.5
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.0e-170 604.0 461 62.9
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.7e-170 603.2 457 63.0
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 3.9e-170 602.1 458 63.8
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 8.7e-170 600.9 457 66.5
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.1e-169 600.5 451 65.0
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 5.6e-169 598.2 458 63.3
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 9.6e-169 597.4 453 64.2
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 8.1e-168 594.3 481 61.1
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 5.8e-166 588.2 465 60.6
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 9.9e-166 587.4 458 60.7
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.1e-164 583.9 453 62.0
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 3.2e-164 582.4 478 60.0
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 1.9e-161 573.2 384 71.4
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 4.3e-161 572.0 461 59.7
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.3e-160 570.5 456 61.0
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.1e-159 567.4 455 61.3
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.4e-159 567.0 456 61.4
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 4.2e-156 555.4 460 61.5
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 1.0e-154 550.8 471 65.4
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.9e-153 546.6 482 56.4
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.3e-152 543.9 457 59.1
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.6e-152 543.5 445 60.7
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.1e-152 543.1 450 59.6
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 3.7e-152 542.3 445 60.4
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 6.2e-152 541.6 451 59.2
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.4e-151 539.7 451 59.2
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 5.8e-150 535.0 452 60.2
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 7.6e-150 534.6 445 59.8
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 6.4e-149 531.6 445 59.6
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.0e-146 524.2 361 70.4
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 1.0e-146 524.2 458 54.6
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.3e-146 523.9 453 58.1
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 5.1e-146 521.9 468 56.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 9.6e-145 517.7 451 58.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 6.2e-144 515.0 467 56.5
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 2.0e-142 510.0 471 55.2
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 7.1e-140 501.5 458 57.0
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.9e-137 493.4 455 53.2
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 3.7e-136 489.2 352 67.3
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 5.3e-135 485.3 347 67.1
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 8.8e-130 468.0 455 54.5
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 8.8e-130 468.0 455 54.5
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.3e-128 464.2 467 52.5
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 3.7e-128 462.6 449 50.8
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 1.0e-125 454.5 353 64.9
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 2.2e-120 436.8 479 49.9
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 3.7e-120 436.0 363 59.8
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.7e-117 427.2 462 47.8
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 3.2e-116 422.9 451 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 5.5e-116 422.2 455 48.6
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 3.7e-112 409.5 297 64.3
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.0e-109 401.4 363 57.9
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 6.5e-109 398.7 470 44.7
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.5e-108 396.7 290 65.9
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 1.7e-104 384.0 455 45.3
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 2.0e-97 360.5 367 51.2
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 2.6e-97 360.1 413 44.3
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.1e-91 339.0 257 65.8
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 2.1e-75 287.3 324 46.3
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.6e-70 271.2 168 74.4
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.7e-69 267.7 250 52.8
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.9e-68 264.2 451 38.8
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 3.1e-66 256.9 210 57.6
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 3.1e-66 256.9 201 62.2
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.7e-64 251.1 196 63.8
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 6.0e-62 242.7 179 64.8
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 5.4e-55 219.5 188 59.6
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.9e-47 194.5 202 52.5
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.2e-41 175.3 117 70.1
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 1.3e-35 155.2 113 60.2
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 2.8e-27 127.5 146 45.9
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.9e-21 107.1 62 72.6
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.2e-14 85.5 100 43.0
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.1e-12 79.0 78 50.0
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 7.4e-12 76.3 76 55.3
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 6.5e-08 63.2 130 36.9
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 8.5e-08 62.8 42 57.1


User provided reference genes

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