Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 3849.7 1962 100.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2669.4 2036 69.6
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2644.8 2003 69.5
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2570.4 1999 68.2
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2562.7 2004 68.0
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2529.2 2007 67.1
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2528.4 1999 67.3
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2515.7 1997 67.7
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2500.3 2031 66.2
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2489.1 2006 65.9
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2478.0 2070 65.2
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2466.0 1998 66.5
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2446.8 2057 64.3
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2426.0 2011 64.8
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2413.6 2014 64.8
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2406.7 2011 64.8
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2405.9 2022 63.6
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2395.9 2136 62.1
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2385.9 2027 63.5
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2367.0 2011 63.6
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2364.7 2012 63.4
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2360.5 2015 63.7
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2360.1 2011 63.4
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2357.4 2008 61.8
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2352.0 2011 63.5
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2332.8 2001 62.6
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2329.3 2014 62.7
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2329.3 1997 62.7
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2328.5 1994 62.5
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2324.3 1982 63.9
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2323.1 1999 63.1
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2320.4 2019 62.2
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2319.7 2029 62.1
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2317.3 1994 62.4
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2315.4 2002 61.9
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2313.1 1999 62.8
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2311.2 2006 63.1
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2303.9 2011 62.4
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2288.5 2044 61.2
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2288.1 2079 60.9
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2286.5 2006 61.9
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2278.8 2004 62.2
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2275.4 1854 65.4
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2270.7 2018 61.5
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2266.5 1985 62.9
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2262.3 2005 61.4
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2261.1 1887 64.0
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2258.4 2033 61.8
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2251.5 1992 61.6
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2239.2 2018 61.3
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2234.1 1989 60.9
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2226.1 2006 60.5
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2221.8 1998 59.7
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2216.8 2004 60.4
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2212.2 1996 61.7
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2204.9 2115 57.8
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2189.5 2018 60.7
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2188.3 2074 58.1
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2182.5 1785 64.8
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2174.1 2153 57.6
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2172.9 2001 59.7
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2169.4 2010 59.7
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2163.3 2034 59.2
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2148.2 1688 68.2
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2141.7 2014 57.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2140.9 2037 60.0
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2133.6 1995 57.9
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2116.3 2105 56.8
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2096.6 1979 58.8
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2077.4 1983 57.9
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2073.9 1979 57.6
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2073.1 1983 57.5
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2069.7 1979 57.4
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2060.4 1980 57.5
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2054.3 1764 62.4
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2048.5 1983 57.6
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2023.1 2009 58.2
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2013.0 1989 56.5
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2012.3 2009 56.2
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2008.8 1977 56.8
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2007.6 1916 59.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1998.8 1977 56.2
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1997.2 1974 56.4
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1992.6 1972 56.2
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1984.5 1998 55.6
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1983.8 1969 56.0
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1978.8 2009 55.4
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1972.2 2023 55.1
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1843.2 2027 53.3
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1842.4 1971 53.6
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1839.7 1479 65.6
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1800.0 1675 58.5
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1716.4 1699 57.3
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1644.0 1367 64.9
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1643.2 2001 50.2
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1625.9 2029 48.4
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1591.2 1438 61.4
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1374.4 1178 64.4
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1372.8 1895 45.5
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1368.6 1228 59.4
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1318.1 1198 61.9
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1253.8 1518 48.1
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1181.8 1406 49.2
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1087.8 775 72.6
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1075.1 777 72.3
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.2e-307 1060.8 776 70.9
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.1e-282 978.0 839 60.7
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.1e-274 949.9 1023 53.0
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 5.6e-268 929.1 2135 33.3
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.8e-267 926.0 962 53.2
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.7e-251 873.2 2148 32.4
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 3.2e-247 860.1 1198 44.9
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 9.4e-231 805.4 1267 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 4.9e-203 713.4 1979 32.2
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.3e-192 678.7 432 76.6
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 6.6e-192 676.4 1024 42.5
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.1e-191 675.6 651 59.1
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.7e-184 651.7 551 64.4
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.1e-177 628.2 1921 30.1
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.8e-165 588.6 592 53.7
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.9e-162 578.6 1601 31.2
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 4.3e-143 514.2 320 77.8
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.8e-134 485.0 512 54.9
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.6e-116 425.2 793 40.1
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.0e-115 421.0 320 69.7
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-101 376.7 523 44.7
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.2e-99 369.0 420 50.5
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.9e-99 368.6 381 51.2
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-95 356.7 219 77.6
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 3.4e-95 355.1 392 55.4
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.7e-91 342.8 210 78.1
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 6.6e-91 340.9 281 64.4
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-85 323.6 296 57.8
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.7e-83 316.2 242 68.6
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 2.5e-82 312.4 196 77.6
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 7.3e-74 284.3 420 43.6
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 5.8e-71 274.6 166 80.1
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.7e-67 263.1 263 54.8
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-67 263.1 1098 26.1
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 5.6e-66 258.1 291 52.6
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 7.3e-66 257.7 163 76.7
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.8e-63 248.1 159 73.0
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 2.5e-58 232.6 223 57.4
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 4.6e-52 211.8 164 62.8
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 4.8e-49 201.8 334 40.7
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.6e-47 196.1 211 56.4
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 2.2e-46 193.0 583 30.2
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.8e-46 192.2 125 71.2
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 5.4e-45 188.3 403 37.0
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.1e-42 180.6 325 36.6
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 5.8e-39 168.3 468 35.0
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 5.5e-37 161.8 132 68.9
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 9.0e-32 144.4 90 77.8
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 5.1e-27 128.6 129 54.3
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 6.3e-25 121.7 73 74.0
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 5.9e-23 115.2 126 52.4
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 9.3e-21 107.8 112 56.2
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 9.3e-21 107.8 112 56.2
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 7.4e-18 98.2 182 41.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.7e-17 95.9 134 49.3
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 3.7e-17 95.9 82 58.5
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.8e-16 93.6 116 46.6
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 6.5e-14 85.1 130 43.8
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 2.5e-13 83.2 169 38.5
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 3.2e-13 82.8 138 39.9
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 3.2e-13 82.8 138 39.1
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 7.2e-13 81.6 67 61.2
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 8.2e-09 68.2 78 56.4
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 2.4e-08 66.6 90 42.2
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 3.1e-08 66.2 105 39.0
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 1.7e-06 60.5 79 38.0
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 6.5e-06 58.5 132 35.6


User provided reference genes

Program Settings