Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 3.5e-89 331.6 171 100.0
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 2.5e-87 325.5 176 97.2
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 5.0e-64 248.1 173 69.9
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 9.5e-63 243.8 166 71.1
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.2e-62 243.4 173 70.5
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.8e-61 239.6 168 70.8
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 8.9e-61 237.3 168 70.2
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.5e-60 236.5 166 66.3
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 3.4e-60 235.3 168 69.6
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 4.4e-60 235.0 166 69.9
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.3e-59 233.4 168 69.6
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 1.7e-59 233.0 168 67.9
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.9e-59 232.3 166 68.7
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 4.1e-58 228.4 168 66.1
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.3e-56 223.4 165 63.0
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 5.1e-56 221.5 165 65.5
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 6.6e-56 221.1 165 65.5
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 1.1e-55 220.3 154 68.8
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 1.9e-55 219.5 166 66.3
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.5e-55 219.2 163 62.6
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.6e-54 216.5 165 61.2
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.6e-54 216.5 166 63.3
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 2.1e-54 216.1 164 67.1
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 3.6e-54 215.3 164 64.6
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 3.1e-53 212.2 160 62.5
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.5e-52 209.9 164 62.2
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.7e-51 205.3 164 59.8
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 6.4e-51 204.5 165 58.8
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 1.1e-50 203.8 163 60.1
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.4e-50 203.4 164 59.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.9e-50 203.0 164 57.9
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 2.4e-50 202.6 164 59.1
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 7.1e-50 201.1 164 57.3
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 7.1e-50 201.1 164 57.3
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 9.2e-50 200.7 164 57.9
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 1.2e-49 200.3 150 67.3
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.6e-49 199.9 164 58.5
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 2.1e-49 199.5 158 62.0
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 2.7e-49 199.1 162 57.4
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 2.7e-49 199.1 162 57.4
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 4.6e-49 198.4 161 57.8
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.0e-48 197.2 165 55.2
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.3e-48 196.8 165 55.8
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 3.0e-48 195.7 164 57.3
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.0e-48 195.7 165 55.2
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.5e-47 193.4 164 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.3e-47 192.2 164 56.1
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 9.6e-47 190.7 165 53.3
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 9.6e-47 190.7 165 56.4
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 2.8e-46 189.1 167 62.3
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 2.8e-46 189.1 164 53.7
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 4.7e-46 188.3 165 56.4
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.1e-45 187.2 135 63.7
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.4e-45 186.8 180 51.1
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.4e-45 186.8 164 54.3
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.8e-45 186.4 170 54.1
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 6.8e-45 184.5 166 51.2
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.2e-44 183.7 164 53.0
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 1.5e-44 183.3 165 52.7
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 1.3e-43 180.3 166 50.6
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 4.9e-43 178.3 165 51.5
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 4.2e-42 175.3 165 51.5
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 4.2e-42 175.3 166 49.4
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 7.1e-42 174.5 166 48.8
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 1.2e-41 173.7 234 42.7
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 2.1e-41 172.9 165 50.9
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 1.7e-40 169.9 166 50.6
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 3.9e-40 168.7 166 52.4
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 8.7e-40 167.5 165 48.5
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 1.5e-39 166.8 165 50.3
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 1.5e-39 166.8 166 46.4
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 3.3e-39 165.6 166 50.6
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 3.3e-39 165.6 166 46.4
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 3.6e-38 162.2 166 45.8
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 4.8e-38 161.8 165 46.1
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.2e-38 161.4 166 45.2
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 8.1e-38 161.0 166 49.4
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 1.4e-37 160.2 142 52.1
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 1.4e-37 160.2 166 45.2
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 2.4e-37 159.5 168 49.4
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 3.1e-37 159.1 166 48.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 4.0e-37 158.7 163 47.2
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 4.0e-37 158.7 166 47.0
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 4.0e-37 158.7 166 47.6
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.5e-36 156.8 130 63.1
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 2.6e-36 156.0 167 49.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 3.4e-36 155.6 165 41.8
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 9.9e-36 154.1 198 42.4
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 3.8e-35 152.1 166 45.8
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 2.1e-33 146.4 164 45.1
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 2.7e-33 146.0 130 53.1
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 4.8e-30 135.2 87 78.2
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.4e-29 132.9 88 75.0
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 3.4e-28 129.0 131 48.9
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 2.3e-24 116.3 86 67.4
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 4.3e-23 112.1 77 67.5
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 5.6e-23 111.7 81 65.4
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 9.0e-21 104.4 289 27.3
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 2.5e-18 96.3 166 29.5
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 9.3e-18 94.4 167 29.9
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 1.3e-16 90.5 197 26.9
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 5.1e-16 88.6 165 27.9
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.9e-15 86.7 166 27.7
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.9e-15 86.7 166 27.1
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.5e-15 86.3 166 28.3
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.5e-15 86.3 167 29.9
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 2.5e-15 86.3 166 28.3
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 4.3e-15 85.5 166 28.3
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 4.3e-15 85.5 166 28.3
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 4.3e-15 85.5 166 27.1
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 5.7e-15 85.1 166 27.7
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 7.4e-15 84.7 166 27.1
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 7.4e-15 84.7 166 26.5
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 7.4e-15 84.7 166 27.7
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 7.4e-15 84.7 166 27.7
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 9.6e-15 84.3 166 27.7
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.3e-14 84.0 166 27.7
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.3e-14 84.0 166 28.9
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.6e-14 83.6 166 27.7
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 1.6e-14 83.6 166 28.3
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 2.1e-14 83.2 166 27.7
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.1e-14 83.2 166 27.1
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 2.1e-14 83.2 166 28.9
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.8e-14 82.8 166 27.1
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.7e-14 82.4 166 27.1
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 3.7e-14 82.4 166 27.1
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 3.7e-14 82.4 166 26.5
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 4.8e-14 82.0 166 27.1
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 8.2e-14 81.3 166 26.5
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 8.2e-14 81.3 166 26.5
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 8.2e-14 81.3 166 26.5
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 8.2e-14 81.3 166 26.5
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 1.4e-13 80.5 166 26.5
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.4e-13 80.5 166 26.5
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.8e-13 80.1 166 25.9
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 1.8e-13 80.1 166 26.5
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.8e-13 80.1 167 26.3
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 1.8e-13 80.1 88 44.3
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.8e-13 80.1 166 24.7
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 2.4e-13 79.7 166 27.7
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 2.4e-13 79.7 166 25.9
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 2.4e-13 79.7 166 27.1
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 2.4e-13 79.7 88 44.3
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 4.1e-13 79.0 166 26.5
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 5.3e-13 78.6 166 25.3
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.3e-13 78.6 166 26.5
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 5.3e-13 78.6 166 27.1
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 6.9e-13 78.2 166 25.3
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 6.9e-13 78.2 166 26.5
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 9.0e-13 77.8 166 26.5
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 9.0e-13 77.8 167 28.1
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 9.0e-13 77.8 166 25.9
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 1.2e-12 77.4 164 27.4
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 1.5e-12 77.0 166 25.3
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 1.5e-12 77.0 164 26.8
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 1.5e-12 77.0 166 25.3
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 2.6e-12 76.3 166 25.3
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.4e-12 75.9 168 26.8
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 3.4e-12 75.9 165 26.1
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 4.5e-12 75.5 166 25.3
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 7.6e-12 74.7 166 24.7
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 7.6e-12 74.7 166 24.7
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 7.6e-12 74.7 166 24.7
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 7.6e-12 74.7 178 25.3
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 7.6e-12 74.7 168 26.8
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 7.6e-12 74.7 168 26.8
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 7.6e-12 74.7 165 24.2
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 1.0e-11 74.3 166 24.1
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.3e-11 73.9 167 26.9
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.8e-11 72.4 162 27.2
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 6.5e-11 71.6 187 26.2
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 1.1e-10 70.9 174 24.7
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.1e-10 70.9 190 23.7
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 3.2e-10 69.3 165 25.5
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 3.2e-10 69.3 166 24.1
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 5.5e-10 68.6 166 24.1
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 7.1e-10 68.2 166 25.9
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.2e-09 67.4 182 23.6
CSS0038024 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D001339 8.7e-08 61.2 42 66.7
CSS0001325 Camellia sinensis var. sinensis HOM05D007418 ORTHO05D009419 1.5e-07 60.5 45 60.0
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.9e-07 60.1 128 26.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 3.7e-06 55.8 123 26.0
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 8.2e-06 54.7 104 28.8


User provided reference genes

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