Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 3.3e-87 325.1 173 100.0
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.7e-17 92.8 145 49.0
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.5e-15 87.0 74 62.2
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.4e-15 85.9 114 54.4
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.8e-13 80.1 115 48.7
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 3.1e-13 79.3 119 48.7
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 7.7e-12 74.7 108 49.1
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 3.8e-11 72.4 47 78.7
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 8.5e-11 71.2 96 53.1
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.5e-10 70.5 157 39.5
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.5e-10 70.5 76 52.6
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.9e-10 70.1 117 37.6
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.9e-10 70.1 78 47.4
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.9e-10 70.1 120 40.8
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.5e-10 69.7 131 38.9
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 4.2e-10 68.9 119 42.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 7.2e-10 68.2 65 58.5
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.2e-09 67.4 109 39.4
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.2e-09 67.4 77 49.4
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.2e-09 67.4 77 49.4
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.6e-09 67.0 82 47.6
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.6e-09 67.0 86 45.3
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 2.1e-09 66.6 74 50.0
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.1e-09 66.6 106 43.4
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 2.1e-09 66.6 60 56.7
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.7e-09 66.2 119 37.8
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 3.6e-09 65.9 119 40.3
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.6e-09 65.9 123 43.9
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 6.1e-09 65.1 124 46.0
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 6.1e-09 65.1 108 50.9
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 6.1e-09 65.1 115 43.5
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 6.1e-09 65.1 78 47.4
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 8.0e-09 64.7 146 37.7
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 8.0e-09 64.7 146 37.0
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.0e-08 64.3 132 39.4
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.8e-08 63.5 111 37.8
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.8e-08 63.5 104 42.3
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.3e-08 63.2 73 47.9
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.3e-08 63.2 120 45.0
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 4.0e-08 62.4 145 36.6
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 6.8e-08 61.6 121 38.8
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.2e-07 60.8 132 38.6
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.5e-07 60.5 120 43.3
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.0e-07 60.1 74 43.2
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 3.4e-07 59.3 160 33.8
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 3.4e-07 59.3 108 39.8
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.4e-07 59.3 122 42.6
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.4e-07 58.9 156 32.7
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 4.4e-07 58.9 70 40.0
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 5.7e-07 58.5 150 36.7
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 7.5e-07 58.2 73 45.2
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 1.3e-06 57.4 81 42.0
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.3e-06 57.4 59 57.6
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.2e-06 56.6 53 52.8
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.2e-06 56.6 53 52.8
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.2e-06 56.6 53 52.8
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.2e-06 56.6 53 52.8
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.2e-06 56.6 72 43.1
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.2e-06 56.6 187 34.2
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.8e-06 56.2 132 37.9
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 2.8e-06 56.2 61 39.3
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.8e-06 56.2 186 36.0
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 4.9e-06 55.5 81 42.0
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 4.9e-06 55.5 81 42.0
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 4.9e-06 55.5 81 42.0
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 4.9e-06 55.5 81 42.0
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 4.9e-06 55.5 81 42.0
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 4.9e-06 55.5 127 34.6
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.3e-06 55.1 153 35.3
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 6.3e-06 55.1 150 30.0
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.3e-06 55.1 123 37.4


User provided reference genes

Program Settings