Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 3.0e-45 184.9 98 100.0
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 8.5e-24 113.6 67 85.1
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 1.8e-18 95.9 62 72.6
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 2.4e-18 95.5 81 69.1
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 1.6e-14 82.8 42 88.1
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 2.1e-14 82.4 47 80.9
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 4.7e-14 81.3 62 66.1
Cc00_g17450 Coffea canephora HOM05D042998 ORTHO05D007824 1.0e-13 80.1 45 88.9
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 1.4e-13 79.7 66 60.6
Cc00_g13940 Coffea canephora HOM05D042998 ORTHO05D007824 3.0e-13 78.6 45 91.1
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 3.0e-13 78.6 55 67.3
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.0e-13 78.6 55 67.3
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.0e-13 78.6 55 67.3
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.0e-13 78.6 55 67.3
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 5.2e-13 77.8 61 62.3
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 5.2e-13 77.8 61 63.9
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 5.2e-13 77.8 64 59.4
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 6.8e-13 77.4 42 81.0
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 8.8e-13 77.0 42 81.0
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 1.2e-12 76.6 61 65.6
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 1.5e-12 76.3 63 60.3
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 1.5e-12 76.3 55 65.5
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 1.5e-12 76.3 70 57.1
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 2.0e-12 75.9 52 61.5
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 3.4e-12 75.1 56 64.3
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 3.4e-12 75.1 66 62.1
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 4.4e-12 74.7 47 72.3
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 5.7e-12 74.3 40 82.5
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 5.7e-12 74.3 68 51.5
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 7.5e-12 73.9 40 80.0
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 9.8e-12 73.6 40 82.5
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 9.8e-12 73.6 58 62.1
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.3e-11 73.2 81 53.1
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 1.3e-11 73.2 47 72.3
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 1.3e-11 73.2 60 65.0
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 1.3e-11 73.2 42 78.6
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 1.3e-11 73.2 40 80.0
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 1.3e-11 73.2 46 69.6
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 1.7e-11 72.8 73 54.8
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 1.7e-11 72.8 54 63.0
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 1.7e-11 72.8 43 72.1
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 2.2e-11 72.4 38 81.6
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 2.2e-11 72.4 55 56.4
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 2.8e-11 72.0 79 53.2
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 2.8e-11 72.0 74 51.4
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 2.8e-11 72.0 73 47.9
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 2.8e-11 72.0 83 50.6
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 2.8e-11 72.0 59 57.6
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 2.8e-11 72.0 42 73.8
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 3.7e-11 71.6 54 57.4
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 3.7e-11 71.6 41 75.6
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 3.7e-11 71.6 40 77.5
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 4.8e-11 71.2 54 55.6
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 4.8e-11 71.2 68 55.9
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 6.3e-11 70.9 55 56.4
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 6.3e-11 70.9 57 56.1
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 6.3e-11 70.9 54 55.6
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 8.3e-11 70.5 54 55.6
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 8.3e-11 70.5 44 72.7
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 1.1e-10 70.1 54 53.7
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 1.1e-10 70.1 72 48.6
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 1.4e-10 69.7 59 59.3
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 1.4e-10 69.7 66 57.6
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 1.8e-10 69.3 64 46.9
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 2.4e-10 68.9 54 53.7
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 2.4e-10 68.9 54 53.7
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 2.4e-10 68.9 54 53.7
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 2.4e-10 68.9 76 48.7
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 2.4e-10 68.9 79 43.0
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 2.4e-10 68.9 73 50.7
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 3.1e-10 68.6 41 73.2
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 4.1e-10 68.2 66 57.6
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 4.1e-10 68.2 66 57.6
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 4.1e-10 68.2 40 75.0
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 5.4e-10 67.8 61 55.7
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 5.4e-10 67.8 40 72.5
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 5.4e-10 67.8 62 56.5
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 5.4e-10 67.8 42 69.0
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 7.0e-10 67.4 66 54.5
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 7.0e-10 67.4 77 49.4
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 7.0e-10 67.4 40 72.5
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 9.1e-10 67.0 66 56.1
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 9.1e-10 67.0 75 48.0
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 9.1e-10 67.0 76 48.7
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 9.1e-10 67.0 76 48.7
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 9.1e-10 67.0 76 48.7
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 9.1e-10 67.0 40 75.0
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 1.2e-09 66.6 67 53.7
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 1.2e-09 66.6 63 55.6
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.2e-09 66.6 82 51.2
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 2.0e-09 65.9 68 60.3
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 2.7e-09 65.5 46 60.9
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 2.7e-09 65.5 40 72.5
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.7e-09 65.5 76 50.0
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 3.5e-09 65.1 47 61.7
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 3.5e-09 65.1 72 45.8
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 5.9e-09 64.3 84 42.9
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 5.9e-09 64.3 42 64.3
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 7.7e-09 63.9 79 43.0
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 1.0e-08 63.5 65 52.3
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 1.3e-08 63.2 40 67.5
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 1.7e-08 62.8 42 64.3
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 1.7e-08 62.8 68 48.5
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 3.8e-08 61.6 53 50.9
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 6.5e-08 60.8 56 51.8
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 6.5e-08 60.8 79 46.8
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 1.9e-07 59.3 41 68.3
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 3.2e-07 58.5 66 50.0


User provided reference genes

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