Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35270 Coffea canephora HOM05D003147 ORTHO05D003245 8.5e-31 136.3 68 100.0
Cc03_g11760 Coffea canephora HOM05D003147 ORTHO05D003245 2.4e-25 118.2 68 89.7
Cc11_g00830 Coffea canephora HOM05D003147 ORTHO05D003245 2.4e-25 118.2 64 89.1
Cc02_g21780 Coffea canephora HOM05D003147 ORTHO05D003245 5.9e-24 113.6 64 87.5
Migut.B00630 Erythranthe guttata HOM05D003147 ORTHO05D003245 6.8e-20 100.1 60 76.7
Peaxi162Scf00001g00315 Petunia axillaris HOM05D003147 ORTHO05D003245 2.0e-19 98.6 63 71.4
CAN.G523.91 Capsicum annuum HOM05D003147 ORTHO05D003245 7.5e-19 96.7 60 73.3
ATR0580G161 Amborella trichopoda HOM05D003147 ORTHO05D003245 9.7e-19 96.3 60 73.3
Rhsim05G0109400 Rhododendron simsii HOM05D003147 ORTHO05D003245 9.7e-19 96.3 62 72.6
FAN02G0631 Fragaria x ananassa HOM05D003147 ORTHO05D003245 1.7e-18 95.5 62 71.0
Nitab4.5_0003434g0100 Nicotiana tabacum HOM05D003147 ORTHO05D003245 4.8e-18 94.0 60 71.7
MD17G1228200 Malus domestica HOM05D003147 ORTHO05D003245 6.3e-18 93.6 64 68.8
Solyc01g104990.4 Solanum lycopersicum HOM05D003147 ORTHO05D003245 6.3e-18 93.6 60 68.3
Sopen01g047510 Solanum pennellii HOM05D003147 ORTHO05D003245 6.3e-18 93.6 60 68.3
PGSC0003DMG400012593 Solanum tuberosum HOM05D003147 ORTHO05D003245 6.3e-18 93.6 60 70.0
HanXRQChr11g0336881 Helianthus annuus HOM05D003147 ORTHO05D003245 8.3e-18 93.2 59 72.9
FAN14G5560 Fragaria x ananassa HOM05D003147 ORTHO05D003245 1.1e-17 92.8 61 70.5
PSO063G1229 Papaver somniferum HOM05D003147 ORTHO05D003245 1.4e-17 92.4 64 65.6
PSO782G1174 Papaver somniferum HOM05D003147 ORTHO05D003245 1.8e-17 92.0 64 64.1
RcHm_v2.0_Chr2g0132081 Rosa chinensis HOM05D003147 ORTHO05D003245 4.1e-17 90.9 61 67.2
SGA_v2.0_scaffold332G48950 Striga asiatica HOM05D003147 ORTHO05D003245 4.1e-17 90.9 65 66.2
vmacro19920 Vaccinium macrocarpon HOM05D003147 ORTHO05D003245 4.1e-17 90.9 62 71.0
Dinv24211 Davidia involucrata HOM05D003147 ORTHO05D003245 5.3e-17 90.5 63 63.5
Thhalv10008708m.g Eutrema salsugineum HOM05D003147 ORTHO05D003245 9.1e-17 89.7 58 72.4
Aqoxy7G03290 Aquilegia oxysepala HOM05D003147 ORTHO05D003245 1.2e-16 89.4 59 67.8
Prupe.3G105200 Prunus persica HOM05D003147 ORTHO05D003245 1.2e-16 89.4 59 67.8
PGR031G2120 Punica granatum HOM05D003147 ORTHO05D003245 1.2e-16 89.4 59 71.2
Lsat_1_v5_gn_7_81160 Lactuca sativa HOM05D003147 ORTHO05D003245 1.6e-16 89.0 60 70.0
AT1G30545 Arabidopsis thaliana HOM05D003147 ORTHO05D003245 2.0e-16 88.6 58 67.2
BcaB07g32667 Brassica carinata HOM05D003147 ORTHO05D003245 2.7e-16 88.2 58 70.7
BcaB07g32693 Brassica carinata HOM05D003147 ORTHO05D003245 2.7e-16 88.2 58 70.7
CARHR029960 Cardamine hirsuta HOM05D003147 ORTHO05D003245 2.7e-16 88.2 58 69.0
AL1G44590 Arabidopsis lyrata HOM05D003147 ORTHO05D003245 3.5e-16 87.8 58 67.2
BcaB04g18211 Brassica carinata HOM05D003147 ORTHO05D003245 3.5e-16 87.8 63 61.9
Nn8g40126 Nelumbo nucifera HOM05D003147 ORTHO05D003245 3.5e-16 87.8 63 63.5
GSVIVG01016089001 Vitis vinifera HOM05D003147 ORTHO05D003245 3.5e-16 87.8 59 69.5
Actinidia28066 Actinidia chinensis HOM05D003147 ORTHO05D003245 4.5e-16 87.4 61 67.2
Haze_16699 Corylus avellana HOM05D003147 ORTHO05D003245 5.9e-16 87.0 60 65.0
Sp1g26420 Schrenkiella parvula HOM05D003147 ORTHO05D003245 5.9e-16 87.0 58 69.0
CSS0045214 Camellia sinensis var. sinensis HOM05D003147 ORTHO05D003245 7.7e-16 86.7 61 65.6
Cfa001840 Carpinus fangiana HOM05D003147 ORTHO05D003245 1.0e-15 86.3 60 65.0
ECA236G4984 Erigeron canadensis HOM05D003147 ORTHO05D003245 1.0e-15 86.3 59 67.8
CiPaw.01G257000 Carya illinoinensis HOM05D003147 ORTHO05D003245 2.9e-15 84.7 60 63.3
MBI14_g16434_MAGBIO Magnolia biondii HOM05D003147 ORTHO05D003245 2.9e-15 84.7 65 64.6
QL09p042296 Quercus lobata HOM05D003147 ORTHO05D003245 2.9e-15 84.7 60 61.7
A08p11090 Brassica napus HOM05D003147 ORTHO05D003245 5.0e-15 84.0 58 63.8
BraA08t33103Z Brassica rapa HOM05D003147 ORTHO05D003245 5.0e-15 84.0 58 63.8
Eucgr.J03135 Eucalyptus grandis HOM05D003147 ORTHO05D003245 5.0e-15 84.0 60 61.7
CARHR029990 Cardamine hirsuta HOM05D003147 ORTHO05D003245 8.5e-15 83.2 58 63.8
BcaC07g37812 Brassica carinata HOM05D003147 ORTHO05D003245 1.9e-14 82.0 63 57.1
BolC8t48201H Brassica oleracea HOM05D003147 ORTHO05D003245 1.9e-14 82.0 63 57.1
AT1G30550 Arabidopsis thaliana HOM05D003147 ORTHO05D003245 7.2e-14 80.1 63 57.1
Os06g0187100 Oryza sativa ssp. japonica HOM05D003147 ORTHO05D003245 9.4e-14 79.7 58 62.1
C07p15090 Brassica napus HOM05D003147 ORTHO05D003245 2.7e-13 78.2 58 60.3
BolC7t42013H Brassica oleracea HOM05D003147 ORTHO05D003245 2.7e-13 78.2 58 60.3
Duzib192G0115 Durio zibethinus HOM05D003147 ORTHO05D003245 2.7e-13 78.2 61 59.0
Carub.0001s2881 Capsella rubella HOM05D003147 ORTHO05D003245 3.6e-13 77.8 58 58.6
A07p09860 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
A07p09880 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
A07p09890 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
A07p09900 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
C07p15070 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
C07p31540 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 60.3
BolC7t42012H Brassica oleracea HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
BraA07t28773Z Brassica rapa HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
BraA07t28775Z Brassica rapa HOM05D003147 ORTHO05D003245 4.7e-13 77.4 58 62.1
Pp3c22_18570 Physcomitrium patens HOM05D003147 ORTHO05D003245 6.1e-13 77.0 62 54.8
MD17G1227900 Malus domestica HOM05D003147 ORTHO05D003245 1.8e-12 75.5 49 71.4
Zm00001eb374430 Zea mays HOM05D003147 ORTHO05D003245 2.3e-12 75.1 59 54.2
Mapoly0102s0034 Marchantia polymorpha HOM05D003147 ORTHO05D003245 8.8e-12 73.2 59 52.5
A09p35890 Brassica napus HOM05D003147 ORTHO05D003245 2.6e-11 71.6 58 56.9
SMO364G0937 Selaginella moellendorffii HOM05D003147 ORTHO05D003245 2.6e-11 71.6 59 54.2
CDE08G1106 Ceratophyllum demersum HOM05D003147 ORTHO05D003245 5.7e-11 70.5 59 54.2
ATR0693G267 Amborella trichopoda HOM05D003147 ORTHO05D003245 7.5e-11 70.1 61 50.8
Aa31LG6G11790 Aethionema arabicum HOM05D003147 ORTHO05D003245 9.8e-11 69.7 52 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3050 Anthoceros agrestis HOM05D003147 ORTHO05D003245 1.3e-10 69.3 61 45.9
Hma1.2p1_0360F.1_g135570 Hydrangea macrophylla HOM05D003147 ORTHO05D003245 1.7e-10 68.9 61 49.2
Hma1.2p1_2046F.1_g312420 Hydrangea macrophylla HOM05D003147 ORTHO05D003245 1.7e-10 68.9 61 49.2
Rhsim06G0050900 Rhododendron simsii HOM05D003147 ORTHO05D003245 2.8e-10 68.2 63 46.0
CSS0007533 Camellia sinensis var. sinensis HOM05D003147 ORTHO05D003245 3.7e-10 67.8 62 48.4
MBI06_g02569_MAGBIO Magnolia biondii HOM05D003147 ORTHO05D003245 6.3e-10 67.0 60 48.3
COL.COLO4_26521 Corchorus olitorius HOM05D003147 ORTHO05D003245 8.3e-10 66.6 61 47.5
Nn5g30284 Nelumbo nucifera HOM05D003147 ORTHO05D003245 8.3e-10 66.6 63 44.4
Dinv35950 Davidia involucrata HOM05D002191 ORTHO05D002292 1.1e-09 66.2 58 50.0
HanXRQChr09g0267541 Helianthus annuus HOM05D003147 ORTHO05D003245 1.1e-09 66.2 61 47.5
Thecc.08G005700 Theobroma cacao HOM05D003147 ORTHO05D003245 1.1e-09 66.2 61 47.5
Cfa018087 Carpinus fangiana HOM05D003147 ORTHO05D003245 1.4e-09 65.9 61 49.2
Duzib116G0700 Durio zibethinus HOM05D003147 ORTHO05D003245 1.4e-09 65.9 62 48.4
Gohir.A06G019000 Gossypium hirsutum HOM05D003147 ORTHO05D003245 1.8e-09 65.5 58 50.0
Gohir.D06G017400 Gossypium hirsutum HOM05D003147 ORTHO05D003245 1.8e-09 65.5 58 50.0
Gorai.010G020300 Gossypium raimondii HOM05D003147 ORTHO05D003245 1.8e-09 65.5 58 50.0
Lalb_Chr14g0368631 Lupinus albus HOM05D003147 ORTHO05D003245 1.8e-09 65.5 63 46.0
Potri.014G028000 Populus trichocarpa HOM05D003147 ORTHO05D003245 1.8e-09 65.5 63 46.0
GSVIVG01009483001 Vitis vinifera HOM05D003147 ORTHO05D003245 1.8e-09 65.5 61 44.3
arahy.Tifrunner.gnm1.ann1.191BIJ Arachis hypogaea HOM05D003147 ORTHO05D003245 2.4e-09 65.1 62 45.2
arahy.Tifrunner.gnm1.ann1.RR4AU3 Arachis hypogaea HOM05D003147 ORTHO05D003245 2.4e-09 65.1 62 45.2
AL1G52900 Arabidopsis lyrata HOM05D003147 ORTHO05D003245 3.1e-09 64.7 57 49.1
ClCG05G019930 Citrullus lanatus HOM05D003147 ORTHO05D003245 3.1e-09 64.7 59 49.2
MELO3C016758.2 Cucumis melo HOM05D003147 ORTHO05D003245 3.1e-09 64.7 58 51.7
CsaV3_4G034370 Cucumis sativus L. HOM05D003147 ORTHO05D003245 4.1e-09 64.3 61 49.2
RcHm_v2.0_Chr6g0308051 Rosa chinensis HOM05D003147 ORTHO05D003245 4.1e-09 64.3 58 46.6
Aqoxy6G01308 Aquilegia oxysepala HOM05D003147 ORTHO05D003245 5.4e-09 63.9 63 42.9
Ca_13288_v3 Cicer arietinum L. HOM05D003147 ORTHO05D003245 5.4e-09 63.9 63 39.7
DCAR_019447 Daucus carota HOM05D003147 ORTHO05D003245 5.4e-09 63.9 61 42.6
FAN20G0187 Fragaria x ananassa HOM05D003147 ORTHO05D003245 5.4e-09 63.9 58 46.6
FAN27G0977 Fragaria x ananassa HOM05D003147 ORTHO05D003245 5.4e-09 63.9 58 46.6
Medtr1g019290 Medicago truncatula HOM05D003147 ORTHO05D003245 5.4e-09 63.9 58 50.0
PGR031G1159 Punica granatum HOM05D003147 ORTHO05D003245 5.4e-09 63.9 62 48.4
PGR031G3752 Punica granatum HOM05D003147 ORTHO05D003245 5.4e-09 63.9 62 46.8
Sed0005207 Sechium edule HOM05D003147 ORTHO05D003245 5.4e-09 63.9 61 45.9
Cpa.g.sc49.28 Carica papaya HOM05D003147 ORTHO05D003245 7.0e-09 63.5 58 46.6
FvH4_2g34310 Fragaria vesca HOM05D003147 ORTHO05D003245 7.0e-09 63.5 58 46.6
FAN15G2685 Fragaria x ananassa HOM05D003147 ORTHO05D003245 7.0e-09 63.5 58 46.6
TWI56G1062 Tripterygium wilfordii HOM05D003147 ORTHO05D003245 7.0e-09 63.5 60 43.3
Eucgr.F02335 Eucalyptus grandis HOM05D003147 ORTHO05D003245 9.1e-09 63.2 58 44.8
PGR031G1312 Punica granatum HOM05D003147 ORTHO05D003245 9.1e-09 63.2 62 45.2
Solyc12g088810.3 Solanum lycopersicum HOM05D003147 ORTHO05D003245 9.1e-09 63.2 56 48.2
Sopen12g030700 Solanum pennellii HOM05D003147 ORTHO05D003245 9.1e-09 63.2 56 48.2
ECA232G3719 Erigeron canadensis HOM05D002191 ORTHO05D002292 1.2e-08 62.8 62 41.9
CARHR036360 Cardamine hirsuta HOM05D003147 ORTHO05D003245 1.6e-08 62.4 57 47.4
Duzib041G0245 Durio zibethinus HOM05D003147 ORTHO05D003245 1.6e-08 62.4 56 50.0
Thhalv10022632m.g Eutrema salsugineum HOM05D003147 ORTHO05D003245 1.6e-08 62.4 57 47.4
Manes.18G038100 Manihot esculenta HOM05D003147 ORTHO05D003245 1.6e-08 62.4 61 45.9
Oeu049988.1 Olea europaea HOM05D003147 ORTHO05D003245 1.6e-08 62.4 56 48.2
AT1G45231 Arabidopsis thaliana HOM05D003147 ORTHO05D003245 2.0e-08 62.0 57 45.6
BcaB07g33872 Brassica carinata HOM05D003147 ORTHO05D003245 2.0e-08 62.0 57 47.4
Lsat_1_v5_gn_4_126480 Lactuca sativa HOM05D003147 ORTHO05D003245 2.0e-08 62.0 61 44.3
Phvul.001G022600 Phaseolus vulgaris HOM05D003147 ORTHO05D003245 2.0e-08 62.0 63 41.3
Prupe.1G434300 Prunus persica HOM05D003147 ORTHO05D003245 2.0e-08 62.0 60 45.0
Carub.0001s3565 Capsella rubella HOM05D003147 ORTHO05D003245 2.7e-08 61.6 57 47.4
CiPaw.16G042700 Carya illinoinensis HOM05D003147 ORTHO05D003245 2.7e-08 61.6 56 48.2
CBR_g31153 Chara braunii HOM05D003147 ORTHO05D003245 2.7e-08 61.6 58 46.6
Sabra14G0019100 Salix brachista HOM05D003147 ORTHO05D003245 2.7e-08 61.6 58 46.6
PGSC0003DMG400015440 Solanum tuberosum HOM05D003147 ORTHO05D003245 2.7e-08 61.6 56 48.2
TAR381G0416 Trochodendron aralioides HOM05D003147 ORTHO05D003245 2.7e-08 61.6 61 45.9
BcaC08g42900 Brassica carinata HOM05D003147 ORTHO05D003245 3.5e-08 61.2 57 47.4
Migut.C00571 Erythranthe guttata HOM05D003147 ORTHO05D003245 3.5e-08 61.2 63 41.3
PSO541G6107 Papaver somniferum HOM05D003147 ORTHO05D003245 3.5e-08 61.2 61 42.6
SalBow7G4374 Salvia bowleyana HOM05D003147 ORTHO05D003245 3.5e-08 61.2 59 44.1
BcaB03g13824 Brassica carinata HOM05D003147 ORTHO05D003245 5.9e-08 60.5 47 61.7
MD15G1081500 Malus domestica HOM05D003147 ORTHO05D003245 5.9e-08 60.5 58 41.4
Zm00001eb019330 Zea mays HOM05D003147 ORTHO05D003245 5.9e-08 60.5 58 44.8
CAN.G1337.32 Capsicum annuum HOM05D003147 ORTHO05D003245 7.7e-08 60.1 56 44.6
Lj5g0008284 Lotus japonicus HOM05D003147 ORTHO05D003245 7.7e-08 60.1 63 39.7
PSO675G4742 Papaver somniferum HOM05D003147 ORTHO05D003245 7.7e-08 60.1 56 46.4
HPP92_011179 Vanilla planifolia HOM05D003147 ORTHO05D003245 7.7e-08 60.1 60 41.7
Lj9A319T61 Lonicera japonica HOM05D003147 ORTHO05D003245 1.0e-07 59.7 42 61.9
Aa31LG3G17380 Aethionema arabicum HOM05D003147 ORTHO05D003245 1.3e-07 59.3 57 45.6
A07p09850 Brassica napus HOM05D003147 ORTHO05D003245 1.3e-07 59.3 48 54.2
TPR.G3810 Trifolium pratense HOM05D003147 ORTHO05D003245 1.3e-07 59.3 58 44.8
MSTRG.25085 Avicennia marina HOM05D003147 ORTHO05D003245 2.3e-07 58.5 64 42.2
Cc10_g04490 Coffea canephora HOM05D003147 ORTHO05D003245 2.9e-07 58.2 58 43.1
Lalb_Chr22g0355081 Lupinus albus HOM05D003147 ORTHO05D003245 2.9e-07 58.2 59 42.4
unitig_26.g9814 Utricularia gibba HOM05D003147 ORTHO05D003245 2.9e-07 58.2 58 41.4
FAN24G2459 Fragaria x ananassa HOM05D003147 ORTHO05D003245 3.8e-07 57.8 52 46.2
SGA_v2.0_scaffold203G41549 Striga asiatica HOM05D003147 ORTHO05D003245 3.8e-07 57.8 62 37.1
THA.LOC104813228 Tarenaya hassleriana HOM05D003147 ORTHO05D003245 3.8e-07 57.8 56 46.4
AUR62026039 Chenopodium quinoa HOM05D003147 ORTHO05D003245 5.0e-07 57.4 60 41.7
Sp1g34080 Schrenkiella parvula HOM05D003147 ORTHO05D003245 6.6e-07 57.0 57 45.6
Atru.chr13.705 Acer truncatum HOM05D003147 ORTHO05D003245 8.6e-07 56.6 61 41.0
Os03g0396900 Oryza sativa ssp. japonica HOM05D003147 ORTHO05D003245 8.6e-07 56.6 58 41.4
Glyma.14G083400 Glycine max HOM05D003147 ORTHO05D003245 1.9e-06 55.5 62 38.7
Sc15g0006080 Simmondsia chinensis HOM05D003147 ORTHO05D003245 1.9e-06 55.5 56 42.9
Ah.04g151790 Amaranthus hybridus HOM05D003147 ORTHO05D003245 4.2e-06 54.3 56 42.9
Nitab4.5_0002865g0130 Nicotiana tabacum HOM05D003147 ORTHO05D003245 5.5e-06 53.9 60 53.3
Hund19148 Selenicereus undatus HOM05D003147 ORTHO05D003245 9.5e-06 53.1 60 40.0


User provided reference genes

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