Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 5.3e-146 521.2 295 100.0
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 1.0e-72 277.7 295 56.9
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 3.9e-64 249.2 299 51.2
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 5.1e-64 248.8 330 51.5
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 4.3e-63 245.7 260 60.0
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 3.1e-61 239.6 261 58.6
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 2.0e-60 236.9 240 55.8
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 4.5e-60 235.7 288 53.8
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 1.3e-59 234.2 292 56.8
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.6e-57 227.3 272 53.3
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 1.3e-56 224.2 262 57.6
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 3.0e-56 223.0 257 56.8
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 5.1e-56 222.2 293 51.9
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 1.6e-54 217.2 261 56.7
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.6e-54 217.2 260 57.7
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 2.1e-54 216.9 302 49.3
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 3.7e-54 216.1 292 53.1
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 4.0e-53 212.6 257 54.5
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 5.3e-53 212.2 299 46.5
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 1.0e-51 208.0 260 56.2
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 2.9e-51 206.5 260 54.6
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.9e-51 206.5 276 48.9
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 2.9e-51 206.5 257 53.7
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 8.4e-51 204.9 311 48.2
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.1e-50 204.5 289 55.0
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.1e-50 204.5 281 48.4
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 1.4e-50 204.1 225 54.7
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 1.4e-50 204.1 257 55.6
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 3.2e-50 203.0 261 52.5
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 3.2e-50 203.0 262 55.0
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 5.5e-50 202.2 259 50.2
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 7.1e-50 201.8 293 51.2
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 9.3e-50 201.4 138 76.8
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 1.2e-49 201.1 277 52.7
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 2.7e-49 199.9 271 50.6
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 3.5e-49 199.5 295 51.5
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 6.1e-49 198.7 291 52.2
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 7.9e-49 198.4 272 50.0
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 1.0e-48 198.0 292 51.0
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 1.8e-48 197.2 302 49.7
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 2.3e-48 196.8 271 50.6
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 3.0e-48 196.4 310 47.4
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 3.9e-48 196.1 221 52.5
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 1.5e-47 194.1 260 54.2
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 2.5e-47 193.4 276 48.6
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.6e-46 190.7 209 52.6
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 2.8e-46 189.9 263 52.5
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.7e-46 189.5 273 51.6
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 4.8e-46 189.1 281 48.4
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 8.2e-46 188.3 275 46.5
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 4.1e-45 186.0 257 53.7
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 4.1e-45 186.0 273 48.7
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 5.3e-45 185.7 273 48.4
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 1.0e-43 181.4 309 47.6
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 1.3e-43 181.0 275 50.5
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.3e-43 181.0 351 42.5
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 1.3e-43 181.0 275 46.5
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 2.9e-43 179.9 264 51.1
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 5.0e-43 179.1 297 48.1
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 5.0e-43 179.1 290 45.9
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 6.5e-43 178.7 252 51.2
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 6.5e-43 178.7 261 44.8
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 8.5e-43 178.3 285 47.0
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 1.1e-42 177.9 274 42.0
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.1e-42 177.9 294 49.0
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.1e-42 177.9 294 49.0
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 5.5e-42 175.6 264 45.5
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 7.2e-42 175.3 285 51.6
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 9.4e-42 174.9 285 51.6
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.2e-41 174.5 249 47.4
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 2.1e-41 173.7 248 48.8
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.1e-41 173.7 285 51.6
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.7e-41 173.3 285 51.6
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 2.7e-41 173.3 262 45.4
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 6.1e-41 172.2 260 45.8
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 7.9e-41 171.8 263 44.1
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 7.9e-41 171.8 231 47.2
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 1.0e-40 171.4 262 46.6
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.4e-40 171.0 163 56.4
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.8e-40 170.6 285 51.2
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 3.9e-40 169.5 270 43.7
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 3.9e-40 169.5 248 50.4
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 3.9e-40 169.5 256 51.6
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 3.9e-40 169.5 262 45.0
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 5.1e-40 169.1 263 45.2
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 6.7e-40 168.7 237 47.7
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 2.5e-39 166.8 211 51.2
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 2.5e-39 166.8 290 51.4
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 2.5e-39 166.8 269 50.2
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 3.3e-39 166.4 326 44.2
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 4.3e-39 166.0 218 49.5
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 4.3e-39 166.0 257 45.5
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 7.4e-39 165.2 287 42.5
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.7e-38 164.1 268 43.3
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 2.2e-38 163.7 275 45.8
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 2.8e-38 163.3 265 44.9
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 8.2e-38 161.8 138 63.8
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 1.1e-37 161.4 300 43.7
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 1.4e-37 161.0 263 46.4
TAR622G0335 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.4e-37 161.0 200 50.5
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 2.4e-37 160.2 308 44.5
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 2.4e-37 160.2 255 46.3
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 5.3e-37 159.1 255 44.3
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 6.9e-37 158.7 266 44.0
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 9.1e-37 158.3 277 50.2
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 1.2e-36 157.9 136 63.2
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 1.2e-36 157.9 260 49.2
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 3.4e-36 156.4 335 38.5
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 1.0e-35 154.8 141 58.9
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 5.0e-35 152.5 244 41.8
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 5.0e-35 152.5 244 41.8
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 8.5e-35 151.8 260 47.7
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 1.4e-34 151.0 244 41.4
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 2.5e-34 150.2 303 42.2
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 4.2e-34 149.4 259 40.9
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 7.2e-34 148.7 141 57.4
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 2.1e-33 147.1 143 54.5
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 2.1e-33 147.1 190 48.4
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 2.7e-33 146.7 247 45.3
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 3.6e-33 146.4 248 44.4
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 4.7e-33 146.0 247 45.3
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 3.9e-32 142.9 140 57.9
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 5.1e-32 142.5 248 43.5
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 8.8e-32 141.7 244 41.8
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 1.1e-31 141.4 243 42.8
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 2.6e-31 140.2 244 43.4
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 5.7e-31 139.0 244 42.6
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 5.7e-31 139.0 265 44.2
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 7.4e-31 138.7 153 51.6
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 9.7e-31 138.3 293 40.6
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.7e-30 137.5 152 53.9
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.2e-28 131.3 263 39.9
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.6e-28 130.2 266 43.2
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 1.7e-27 127.5 216 43.1
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 3.8e-27 126.3 281 38.1
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 3.8e-27 126.3 266 40.6
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.1e-26 124.8 311 39.2
Prupe.1G265800 Prunus persica HOM05D003373 ORTHO05D004419 2.7e-25 120.2 197 52.3
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 4.7e-25 119.4 169 45.6
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 2.3e-24 117.1 285 39.6
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 5.2e-24 115.9 212 43.4
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 1.5e-23 114.4 283 37.1
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 9.7e-23 111.7 126 48.4
C02p06900 Brassica napus HOM05D003373 ORTHO05D004419 1.3e-22 111.3 86 64.0
C02p07020 Brassica napus HOM05D003373 ORTHO05D004419 1.3e-22 111.3 86 64.0
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.3e-22 111.3 215 41.4
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 8.2e-22 108.6 222 36.0
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 3.1e-21 106.7 262 38.2
Peaxi162Scf00026g00225 Petunia axillaris HOM05D003373 ORTHO05D004419 5.3e-21 105.9 248 37.5
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.0e-20 104.0 115 46.1
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 3.5e-20 103.2 312 32.4
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 2.9e-19 100.1 163 39.3
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 4.2e-18 96.3 176 37.5
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 2.1e-17 94.0 291 31.3
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 4.7e-17 92.8 161 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 6.1e-17 92.4 161 37.3
HPP92_019602 Vanilla planifolia HOM05D003373 ORTHO05D004419 8.0e-17 92.0 233 37.3
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 1.4e-16 91.3 229 35.4
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 3.0e-16 90.1 192 34.4
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 4.0e-16 89.7 179 34.6
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 8.8e-16 88.6 222 34.2
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 8.8e-16 88.6 222 34.2
Haze_17061 Corylus avellana HOM05D003373 ORTHO05D004419 1.7e-14 84.3 75 54.7
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 2.4e-13 80.5 100 39.0
BcaC03g15848 Brassica carinata HOM05D007458 ORTHO05D009533 2.0e-12 77.4 80 55.0
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 2.7e-12 77.0 75 53.3
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.0e-11 75.1 74 52.7
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 5.0e-11 72.8 78 47.4
A07p13300 Brassica napus HOM05D003373 ORTHO05D041218 9.4e-10 68.6 108 44.4
BraA07t29101Z Brassica rapa HOM05D003373 ORTHO05D041218 9.4e-10 68.6 108 44.4
SalBow8G0196 Salvia bowleyana HOM05D003373 ORTHO05D004419 4.7e-09 66.2 57 68.4
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 6.1e-09 65.9 75 45.3
Sc04g0008500 Simmondsia chinensis HOM05D003373 ORTHO05D004419 1.8e-08 64.3 56 57.1


User provided reference genes

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