Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 2.1e-88 328.9 162 100.0
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.0e-58 228.8 154 70.8
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 5.7e-57 224.6 154 68.2
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.3e-56 223.4 154 67.5
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 4.8e-56 221.5 153 66.0
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 6.3e-56 221.1 154 66.9
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 2.4e-55 219.2 154 65.6
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 3.1e-55 218.8 160 63.8
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 9.0e-55 217.2 154 64.9
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 9.0e-55 217.2 154 64.9
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.2e-54 216.9 154 66.2
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 7.6e-54 214.2 154 63.6
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 7.6e-54 214.2 154 63.6
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.9e-53 212.2 154 64.3
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 2.9e-53 212.2 153 64.1
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 3.8e-53 211.8 154 64.3
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 6.5e-53 211.1 154 64.3
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 1.4e-52 209.9 154 62.3
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.4e-52 209.9 154 61.0
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 2.5e-52 209.1 154 64.9
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 4.2e-52 208.4 154 64.3
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 7.2e-52 207.6 153 62.1
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 7.2e-52 207.6 153 62.1
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 7.2e-52 207.6 153 62.1
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 7.2e-52 207.6 154 59.1
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 2.7e-51 205.7 153 62.1
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 2.7e-51 205.7 154 61.0
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 1.3e-50 203.4 154 60.4
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 1.3e-50 203.4 153 64.7
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 3.0e-50 202.2 158 63.3
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 3.9e-50 201.8 154 63.6
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 5.1e-50 201.4 153 62.1
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 5.1e-50 201.4 153 60.1
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 5.1e-50 201.4 154 58.4
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 6.7e-50 201.1 155 62.6
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-49 199.5 154 62.3
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 2.5e-49 199.1 153 60.1
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 3.3e-49 198.7 159 61.6
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 3.3e-49 198.7 158 63.9
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 3.3e-49 198.7 158 63.9
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 3.3e-49 198.7 153 60.1
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.3e-49 198.4 153 61.4
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 4.3e-49 198.4 153 60.8
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 5.7e-49 198.0 155 60.0
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 1.3e-48 196.8 155 62.6
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 1.3e-48 196.8 155 62.6
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 1.6e-48 196.4 154 61.7
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 1.6e-48 196.4 153 60.1
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 2.2e-48 196.1 157 63.1
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 2.2e-48 196.1 153 60.1
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 2.8e-48 195.7 154 57.8
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 4.8e-48 194.9 156 60.9
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 4.8e-48 194.9 154 58.4
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 6.3e-48 194.5 154 57.8
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.1e-47 193.7 161 63.4
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 1.1e-47 193.7 153 59.5
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 1.1e-47 193.7 153 58.8
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 1.4e-47 193.4 153 62.1
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.4e-47 193.4 156 60.3
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 1.8e-47 193.0 160 61.2
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 5.3e-47 191.4 155 60.0
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 6.9e-47 191.0 156 59.6
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 6.9e-47 191.0 156 59.0
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 6.9e-47 191.0 154 57.8
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 6.9e-47 191.0 153 57.5
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 6.9e-47 191.0 171 54.4
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.2e-46 190.3 156 60.9
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 1.5e-46 189.9 161 60.2
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.0e-46 189.5 156 59.0
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 4.5e-46 188.3 156 59.6
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 4.5e-46 188.3 153 57.5
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.0e-45 187.2 153 56.2
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.3e-45 186.8 154 63.0
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 2.2e-45 186.0 153 58.8
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 2.9e-45 185.7 154 56.5
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 8.5e-45 184.1 179 53.6
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.9e-44 183.0 137 62.0
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 1.9e-44 183.0 154 57.8
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 9.4e-44 180.6 156 57.7
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 6.1e-43 177.9 224 44.2
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 4.8e-40 168.3 154 50.6
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 4.8e-40 168.3 164 53.0
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 1.4e-39 166.8 172 51.2
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 1.5e-38 163.3 138 58.0
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 1.0e-37 160.6 130 58.5
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 2.2e-37 159.5 137 55.5
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 5.0e-37 158.3 138 52.9
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 6.5e-37 157.9 153 51.0
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.9e-36 156.4 153 51.0
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 7.2e-36 154.5 153 51.6
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 1.8e-34 149.8 73 100.0
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 2.8e-32 142.5 153 49.0
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 1.8e-31 139.8 117 56.4
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 1.8e-31 139.8 153 48.4
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 4.1e-31 138.7 163 43.6
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 7.7e-30 134.4 155 43.9
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 7.7e-30 134.4 155 43.9
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 1.4e-26 123.6 161 40.4
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 3.0e-26 122.5 154 46.1
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.1e-23 114.0 136 40.4
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 4.1e-23 112.1 71 70.4
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 7.0e-23 111.3 160 40.6
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 2.1e-19 99.8 99 49.5
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 9.8e-17 90.9 172 34.9
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.6e-14 83.6 158 34.8
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 4.0e-10 68.9 165 34.5
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 1.4e-07 60.5 67 43.3


User provided reference genes

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