Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34820 Coffea canephora HOM05D000049 ORTHO05D000027 1.4e-31 139.0 72 100.0
Cc03_g11540 Coffea canephora HOM05D000049 ORTHO05D000027 4.8e-24 114.0 61 95.1
BcaB08g34819 Brassica carinata HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
BcaC01g06894 Brassica carinata HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
BcaC06g36405 Brassica carinata HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
C07p04470 Brassica napus HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
BolC3t18177H Brassica oleracea HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
BolC7t40842H Brassica oleracea HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
BraA06t26255Z Brassica rapa HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
BraA07t28026Z Brassica rapa HOM05D000049 ORTHO05D000027 1.8e-23 112.1 61 91.8
Sed0013382 Sechium edule HOM05D000049 ORTHO05D000027 2.4e-23 111.7 61 91.8
CsaV3_6G046260 Cucumis sativus L. HOM05D000049 ORTHO05D000027 4.0e-23 110.9 61 91.8
Migut.H00987 Erythranthe guttata HOM05D000049 ORTHO05D000027 4.0e-23 110.9 61 91.8
SGA_v2.0_scaffold614G53204 Striga asiatica HOM05D000049 ORTHO05D000027 4.0e-23 110.9 61 91.8
AT2G18390 Arabidopsis thaliana HOM05D000049 ORTHO05D000027 5.3e-23 110.5 61 90.2
CARHR108990 Cardamine hirsuta HOM05D000049 ORTHO05D000027 5.3e-23 110.5 61 90.2
PGR119G0481 Punica granatum HOM05D000049 ORTHO05D000027 5.3e-23 110.5 61 91.8
Thecc.01G034800 Theobroma cacao HOM05D000049 ORTHO05D000027 5.3e-23 110.5 61 91.8
TAR381G0235 Trochodendron aralioides HOM05D000049 ORTHO05D000027 5.3e-23 110.5 61 90.2
AL3G51670 Arabidopsis lyrata HOM05D000049 ORTHO05D000027 6.9e-23 110.2 61 88.5
Carub.0003s3254 Capsella rubella HOM05D000049 ORTHO05D000027 6.9e-23 110.2 61 88.5
TWI09G0572 Tripterygium wilfordii HOM05D000049 ORTHO05D000027 6.9e-23 110.2 61 88.5
arahy.Tifrunner.gnm1.ann1.RR0NEL Arachis hypogaea HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
EL10Ac6g15558 Beta vulgaris HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
EL10Ac7g16258 Beta vulgaris HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
COL.COLO4_24893 Corchorus olitorius HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Duzib187G0891 Durio zibethinus HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Eucgr.D02615 Eucalyptus grandis HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Glyma.01G176300 Glycine max HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Glyma.11G068500 Glycine max HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Gohir.A11G184201 Gossypium hirsutum HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Gohir.D11G190700 Gossypium hirsutum HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Gorai.007G203200 Gossypium raimondii HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Lalb_Chr09g0333501 Lupinus albus HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Peaxi162Scf00889g00110 Petunia axillaris HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Phvul.002G030600 Phaseolus vulgaris HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
SalBow1G0952 Salvia bowleyana HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Sp3g31800 Schrenkiella parvula HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
SpUn0030_0030 Schrenkiella parvula HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Solyc07g014650.3 Solanum lycopersicum HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
Sopen07g005510 Solanum pennellii HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
vmacro17827 Vaccinium macrocarpon HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
VMungo1215G1137 Vigna mungo HOM05D000049 ORTHO05D000027 9.0e-23 109.8 61 90.2
AUR62004056 Chenopodium quinoa HOM05D000049 ORTHO05D000027 1.2e-22 109.4 61 90.2
Potri.007G024800 Populus trichocarpa HOM05D000049 ORTHO05D000027 1.2e-22 109.4 61 90.2
Sabra07G0021900 Salix brachista HOM05D000049 ORTHO05D000027 1.2e-22 109.4 61 90.2
Hund20734 Selenicereus undatus HOM05D000049 ORTHO05D000027 1.2e-22 109.4 61 90.2
CSS0005450 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
CAN.G700.20 Capsicum annuum HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
CiPaw.01G039600 Carya illinoinensis HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 88.5
ClCG01G019550 Citrullus lanatus HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
MELO3C007829.2 Cucumis melo HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
Dinv39989 Davidia involucrata HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
Gohir.A02G165900 Gossypium hirsutum HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 88.5
Gorai.003G014400 Gossypium raimondii HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 88.5
Nitab4.5_0000053g0130 Nicotiana tabacum HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 88.5
Rhsim08G0117800 Rhododendron simsii HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
GSVIVG01018953001 Vitis vinifera HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
Zm00001eb052220 Zea mays HOM05D000049 ORTHO05D000027 1.5e-22 109.0 61 90.2
Atru.chr12.876 Acer truncatum HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
Atru.chr3.581 Acer truncatum HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 2.0e-22 108.6 61 88.5
HanXRQChr09g0261491 Helianthus annuus HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
Hma1.2p1_0400F.1_g144370 Hydrangea macrophylla HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
Lsat_1_v5_gn_4_152040 Lactuca sativa HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
MD03G1270500 Malus domestica HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 86.9
Manes.01G141100 Manihot esculenta HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
QL06p046218 Quercus lobata HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
TAR625G0429 Trochodendron aralioides HOM05D000049 ORTHO05D000027 2.0e-22 108.6 61 88.5
Thhalv10022871m.g Eutrema salsugineum HOM05D000049 ORTHO05D000027 2.6e-22 108.2 61 88.5
Gohir.A08G117650 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.6e-22 108.2 61 88.5
Oeu042403.1 Olea europaea HOM05D000049 ORTHO05D000027 2.6e-22 108.2 60 91.7
Cfa004414 Carpinus fangiana HOM05D000049 ORTHO05D000027 3.4e-22 107.8 61 88.5
Haze_25324 Corylus avellana HOM05D000049 ORTHO05D000027 3.4e-22 107.8 61 88.5
Medtr8g077540 Medicago truncatula HOM05D000049 ORTHO05D000027 3.4e-22 107.8 61 86.9
Os02g0327100 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 3.4e-22 107.8 61 90.2
PSO017G0329 Papaver somniferum HOM05D000049 ORTHO05D000027 3.4e-22 107.8 61 88.5
PSO675G6496 Papaver somniferum HOM05D000049 ORTHO05D000027 3.4e-22 107.8 61 88.5
HPP92_027717 Vanilla planifolia HOM05D000049 ORTHO05D000027 3.4e-22 107.8 60 90.0
Ca_22270_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 4.5e-22 107.5 61 86.9
Ca_22283_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 4.5e-22 107.5 61 86.9
DCAR_017292 Daucus carota HOM05D000049 ORTHO05D000027 4.5e-22 107.5 60 90.0
Gohir.D03G014100 Gossypium hirsutum HOM05D000049 ORTHO05D000027 4.5e-22 107.5 61 86.9
Psat4g092960 Pisum sativum HOM05D000049 ORTHO05D000027 4.5e-22 107.5 61 86.9
Aa31LG8G15640 Aethionema arabicum HOM05D000049 ORTHO05D000027 5.8e-22 107.1 61 86.9
Lj1g0019429 Lotus japonicus HOM05D000049 ORTHO05D000027 5.8e-22 107.1 61 88.5
LjContig00448g0006848 Lotus japonicus HOM05D000049 ORTHO05D000027 5.8e-22 107.1 61 88.5
Sc03g0002990 Simmondsia chinensis HOM05D000049 ORTHO05D000027 5.8e-22 107.1 61 88.5
THA.LOC104819787 Tarenaya hassleriana HOM05D000049 ORTHO05D000027 5.8e-22 107.1 61 86.9
Lj4A201T51 Lonicera japonica HOM05D000049 ORTHO05D000027 7.6e-22 106.7 61 88.5
ClCG01G019580 Citrullus lanatus HOM05D000049 ORTHO05D000027 1.3e-21 105.9 59 91.5
FvH4_5g39540 Fragaria vesca HOM05D000049 ORTHO05D000027 1.3e-21 105.9 61 83.6
FAN04G0739 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.3e-21 105.9 61 83.6
FAN18G4380 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.3e-21 105.9 61 83.6
RcHm_v2.0_Chr7g0241851 Rosa chinensis HOM05D000049 ORTHO05D000027 1.3e-21 105.9 61 83.6
Aqoxy5G01620 Aquilegia oxysepala HOM05D000049 ORTHO05D000027 1.7e-21 105.5 61 85.2
CANSAT54G0966 Cannabis sativa HOM05D000049 ORTHO05D000027 1.7e-21 105.5 60 86.7
CAN.G33.7 Capsicum annuum HOM05D000049 ORTHO05D000027 1.7e-21 105.5 61 86.9
CDE07G1378 Ceratophyllum demersum HOM05D000049 ORTHO05D000027 1.7e-21 105.5 61 82.0
TPR.G24123 Trifolium pratense HOM05D000049 ORTHO05D000027 1.7e-21 105.5 59 89.8
Manes.02G099400 Manihot esculenta HOM05D000049 ORTHO05D000027 2.2e-21 105.1 61 86.9
ATR0916G006 Amborella trichopoda HOM05D000049 ORTHO05D000027 3.8e-21 104.4 60 86.7
COL.COLO4_35758 Corchorus olitorius HOM05D003614 ORTHO05D004156 3.8e-21 104.4 58 91.4
Cfa009642 Carpinus fangiana HOM05D000049 ORTHO05D000027 5.0e-21 104.0 61 85.2
PGSC0003DMG400029959 Solanum tuberosum HOM05D000049 ORTHO05D000027 5.0e-21 104.0 74 75.7
FAN08G3444 Fragaria x ananassa HOM05D000049 ORTHO05D000027 8.4e-21 103.2 61 82.0
Lj3g0012089 Lotus japonicus HOM05D000049 ORTHO05D000027 8.4e-21 103.2 61 86.9
Nn1g04974 Nelumbo nucifera HOM05D000049 ORTHO05D000027 2.5e-20 101.7 57 91.2
FAN13G2744 Fragaria x ananassa HOM05D000049 ORTHO05D000027 5.5e-20 100.5 59 83.1
SEGI_00520 Sequoiadendron giganteum HOM05D000049 ORTHO05D000027 5.5e-20 100.5 60 83.3
A06p33240 Brassica napus HOM05D000049 ORTHO05D000027 2.1e-19 98.6 85 65.9
C03p59210 Brassica napus HOM05D000049 ORTHO05D000027 2.1e-19 98.6 85 65.9
SMO147G0423 Selaginella moellendorffii HOM05D000049 ORTHO05D000027 2.7e-19 98.2 60 83.3
Mapoly0224s0005 Marchantia polymorpha HOM05D000049 ORTHO05D000027 3.5e-19 97.8 60 81.7
FAN07G0658 Fragaria x ananassa HOM05D000049 ORTHO05D000027 4.6e-19 97.4 61 73.8
FAN13G2968 Fragaria x ananassa HOM05D000049 ORTHO05D000027 6.1e-19 97.1 61 73.8
Gohir.A06G179900 Gossypium hirsutum HOM05D000049 ORTHO05D000027 7.9e-19 96.7 53 88.7
Gohir.A04G080200 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.3e-18 95.1 53 86.8
Pp3c8_12060 Physcomitrium patens HOM05D000728 ORTHO05D001474 2.3e-18 95.1 60 78.3
Gohir.A02G014800 Gossypium hirsutum HOM05D000049 ORTHO05D000027 3.0e-18 94.7 53 86.8
FvH4_5g30040 Fragaria vesca HOM05D000049 ORTHO05D000027 5.1e-18 94.0 61 72.1
FAN04G1908 Fragaria x ananassa HOM05D000049 ORTHO05D000027 5.1e-18 94.0 59 74.6
SHI22887 Sapria himalayana HOM05D000049 ORTHO05D000027 1.6e-16 89.0 102 52.9
MCO01G341 Micromonas commoda HOM05D000049 ORTHO05D000027 2.2e-16 88.6 61 68.9
MCO01G435 Micromonas commoda HOM05D000049 ORTHO05D000027 2.2e-16 88.6 61 68.9
PRCOL_00005049 Prasinoderma coloniale HOM05D000049 ORTHO05D000027 1.8e-15 85.5 60 70.0
arahy.Tifrunner.gnm1.ann1.4F14CM Arachis hypogaea HOM05D000049 ORTHO05D000027 2.0e-14 82.0 45 86.7
Gohir.A08G134200 Gossypium hirsutum HOM05D000049 ORTHO05D000027 7.7e-14 80.1 45 84.4
Haze_26860 Corylus avellana HOM05D000049 ORTHO05D000027 2.2e-13 78.6 61 59.0
Cc06_g21230 Coffea canephora HOM05D001472 ORTHO05D000027 2.9e-13 78.2 43 93.0
Sopen09g026040 Solanum pennellii HOM05D000049 ORTHO05D000027 3.8e-13 77.8 48 83.3
Psat3g040480 Pisum sativum HOM05D000049 ORTHO05D000027 2.5e-12 75.1 41 85.4
QL02p021742 Quercus lobata HOM05D000049 ORTHO05D000027 2.5e-12 75.1 42 85.7
Prupe.5G036300 Prunus persica HOM05D000049 ORTHO05D000027 7.2e-12 73.6 41 80.5
Ciclev10032495m.g Citrus clementina HOM05D000049 ORTHO05D000027 2.1e-11 72.0 39 84.6
Cre01.g005550 Chlamydomonas reinhardtii HOM05D000049 ORTHO05D000027 3.0e-10 68.2 44 70.5
Cre04.g218250 Chlamydomonas reinhardtii HOM05D000049 ORTHO05D000027 3.0e-10 68.2 55 60.0
MCO11G216 Micromonas commoda HOM05D000049 ORTHO05D000027 8.8e-10 66.6 60 50.0
FAN18G1560 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.5e-09 65.9 41 70.7
AagrBONN_evm.TU.Sc2ySwM_369.478 Anthoceros agrestis HOM05D000049 ORTHO05D000027 3.3e-09 64.7 61 52.5
PRCOL_00004866 Prasinoderma coloniale HOM05D000049 ORTHO05D000027 9.7e-09 63.2 60 48.3
PRCOL_00002545 Prasinoderma coloniale HOM05D000049 ORTHO05D000027 2.2e-08 62.0 60 46.7
RcHm_v2.0_Chr6g0264421 Rosa chinensis HOM05D000049 ORTHO05D000027 2.8e-08 61.6 39 66.7
RcHm_v2.0_Chr7g0224231 Rosa chinensis HOM05D000049 ORTHO05D000027 1.8e-07 58.9 38 73.7
Pp3c3_17810 Physcomitrium patens HOM05D000049 ORTHO05D000027 9.1e-07 56.6 61 47.5
BcaB03g16643 Brassica carinata HOM05D000049 ORTHO05D000027 5.9e-06 53.9 26 92.3
Manes.13G118900 Manihot esculenta HOM05D000049 ORTHO05D000027 5.9e-06 53.9 62 48.4
Rhsim08G0097800 Rhododendron simsii HOM05D000049 ORTHO05D000027 5.9e-06 53.9 62 48.4
Medtr5g016540 Medicago truncatula HOM05D000049 ORTHO05D000027 7.7e-06 53.5 62 48.4
Psat2g168160 Pisum sativum HOM05D000049 ORTHO05D000027 7.7e-06 53.5 62 48.4
VMungo1215G1849 Vigna mungo HOM05D000049 ORTHO05D000027 7.7e-06 53.5 62 48.4


User provided reference genes

Program Settings