Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.9e-119 432.6 229 100.0
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.5e-79 300.1 242 70.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.1e-77 293.9 232 69.4
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.1e-77 293.9 241 68.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 9.1e-77 290.8 232 69.0
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.0e-76 289.7 234 67.9
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.0e-76 289.7 236 67.8
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.5e-76 288.9 237 69.6
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 7.7e-76 287.7 228 68.4
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.2e-75 286.2 232 68.5
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 8.5e-75 284.3 245 66.1
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.5e-74 282.7 228 68.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 3.2e-74 282.3 232 67.2
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.2e-74 282.3 229 68.1
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 7.2e-74 281.2 234 66.2
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.6e-73 280.0 228 68.0
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 2.7e-73 279.3 239 65.7
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.6e-73 278.9 233 67.4
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.1e-73 278.1 229 67.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 6.1e-73 278.1 238 66.4
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 8.0e-73 277.7 234 66.7
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.0e-72 277.3 233 64.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.4e-72 276.9 232 66.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 3.0e-72 275.8 230 64.8
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.5e-71 273.5 230 67.4
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.5e-71 273.5 230 67.4
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 3.3e-71 272.3 233 67.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.7e-71 271.6 246 65.4
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.7e-71 271.6 230 67.0
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 5.7e-71 271.6 233 66.1
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 7.4e-71 271.2 230 66.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 9.7e-71 270.8 236 64.4
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 9.7e-71 270.8 230 65.7
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.7e-70 270.0 140 100.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-70 270.0 229 65.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.8e-70 269.2 231 68.0
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.8e-70 269.2 231 68.0
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.7e-70 268.9 235 66.0
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.2e-70 267.7 234 64.5
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-69 267.3 234 64.5
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.1e-69 267.3 235 65.1
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-69 266.9 234 64.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.4e-69 266.9 229 66.4
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.1e-69 265.4 233 65.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.0e-68 263.1 231 63.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.0e-68 263.1 231 63.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.5e-68 262.3 166 81.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 7.7e-68 261.2 229 63.8
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.3e-67 260.4 235 63.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.3e-67 260.4 232 62.1
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 6.5e-67 258.1 235 63.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-66 257.3 235 61.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 2.5e-66 256.1 173 75.1
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 9.4e-66 254.2 181 72.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.1e-65 253.1 238 59.7
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.1e-65 253.1 238 61.8
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 8.0e-65 251.1 231 63.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 8.0e-65 251.1 231 63.6
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 8.0e-65 251.1 231 63.6
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.4e-64 250.4 239 61.9
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-64 250.4 237 59.9
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 4.0e-64 248.8 244 58.2
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.6e-63 246.1 230 60.9
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 3.4e-63 245.7 212 67.0
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 5.7e-63 245.0 247 56.7
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 9.7e-63 244.2 227 60.4
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.7e-62 243.4 238 58.8
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.7e-62 243.4 236 59.3
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 4.1e-61 238.8 195 63.1
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 5.3e-61 238.4 232 58.6
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 9.1e-61 237.7 238 57.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.2e-59 233.0 161 71.4
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.9e-59 232.6 219 60.7
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 6.5e-59 231.5 141 83.7
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.5e-58 230.3 229 59.0
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.5e-58 230.3 229 59.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.5e-58 230.3 171 70.8
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 7.2e-58 228.0 234 57.7
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 7.2e-58 228.0 234 57.7
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.2e-57 227.3 235 55.7
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.6e-57 226.9 236 57.2
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.6e-57 226.9 236 57.2
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 2.7e-57 226.1 234 57.3
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 6.1e-57 224.9 141 81.6
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 8.0e-57 224.6 235 57.9
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 8.0e-57 224.6 234 56.8
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.0e-56 224.2 229 60.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-56 223.4 241 55.6
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.3e-56 223.0 234 55.6
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 5.2e-56 221.9 236 56.4
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 8.3e-54 214.5 256 50.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 4.1e-53 212.2 237 54.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 5.4e-53 211.8 208 59.1
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 7.0e-53 211.5 199 60.8
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.7e-52 209.5 239 54.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.7e-52 209.5 233 53.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.7e-51 206.8 230 55.7
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.6e-51 204.9 230 56.1
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.5e-50 203.0 160 68.1
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.3e-50 202.6 241 52.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 3.3e-50 202.6 197 58.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.7e-49 198.7 174 63.8
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.4e-48 197.2 149 71.1
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 7.5e-47 191.4 181 58.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.7e-46 190.3 251 50.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 3.7e-46 189.1 161 62.1
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 7.0e-45 184.9 205 54.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 3.5e-44 182.6 230 45.7
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.5e-44 182.2 177 57.6
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.0e-43 181.0 168 57.7
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.7e-43 180.3 119 75.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.3e-43 179.9 151 67.5
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.3e-40 169.9 141 64.5
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-39 167.5 175 56.0
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 4.4e-39 165.6 168 54.8
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-37 160.6 168 56.0
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 3.5e-36 156.0 159 49.7
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.6e-36 155.6 100 77.0
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.0e-35 154.5 166 54.8
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.3e-35 154.1 110 74.5
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.3e-35 154.1 116 69.8
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 2.3e-35 153.3 100 77.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 5.0e-35 152.1 112 68.8
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.5e-34 150.6 246 43.9
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.1e-32 144.4 109 66.1
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.6e-31 139.8 150 50.7
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.3e-30 137.5 145 52.4
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-25 120.9 79 75.9
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.6e-25 120.6 136 53.7
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 6.2e-25 118.6 132 53.8
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 2.3e-24 116.7 195 39.0
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.7e-20 103.2 79 69.6
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 2.9e-14 83.2 115 46.1
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 9.0e-08 61.6 45 68.9
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 9.0e-08 61.6 45 68.9
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 9.0e-08 61.6 45 68.9
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 4.4e-07 59.3 43 69.8


User provided reference genes

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