Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34420 Coffea canephora HOM05D025805 ORTHO05D011265 1.4e-46 189.1 85 100.0
Cc06_g22590 Coffea canephora HOM05D025805 ORTHO05D011265 2.8e-31 138.3 85 70.6
Cc00_g24240 Coffea canephora HOM05D025805 ORTHO05D011265 2.4e-30 135.2 85 69.4
Cc06_g22580 Coffea canephora HOM05D025805 ORTHO05D011265 3.7e-23 111.3 89 60.7
PGSC0003DMG400011185 Solanum tuberosum HOM05D015613 ORTHO05D011265 8.2e-15 83.6 76 53.9
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 1.8e-14 82.4 85 50.6
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 5.3e-14 80.9 86 50.0
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 2.9e-12 75.1 87 47.1
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.4e-11 72.8 87 49.4
Peaxi162Scf00069g00313 Petunia axillaris HOM05D015613 ORTHO05D011265 1.4e-11 72.8 82 47.6
Solyc07g009230.3 Solanum lycopersicum HOM05D015613 ORTHO05D011265 1.9e-11 72.4 85 43.5
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 2.5e-11 72.0 74 48.6
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 3.2e-11 71.6 87 46.0
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 3.2e-11 71.6 87 46.0
Sopen07g017220 Solanum pennellii HOM05D015613 ORTHO05D011265 3.2e-11 71.6 85 42.4
PGSC0003DMG400024205 Solanum tuberosum HOM05D015613 ORTHO05D011265 1.2e-10 69.7 85 42.4
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 4.6e-10 67.8 74 47.3
Peaxi162Scf00324g00714 Petunia axillaris HOM05D024896 ORTHO05D002541 4.6e-10 67.8 87 46.0
Ciclev10029711m.g Citrus clementina HOM05D002484 ORTHO05D002541 7.9e-10 67.0 87 42.5
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 7.9e-10 67.0 83 44.6
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 7.9e-10 67.0 76 44.7
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 3.9e-09 64.7 73 47.9
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 1.9e-08 62.4 91 41.8
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.9e-08 62.4 77 42.9
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 3.3e-08 61.6 78 44.9
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 5.7e-08 60.8 73 42.5
Nitab4.5_0000023g0290 Nicotiana tabacum HOM05D002484 ORTHO05D002541 5.7e-08 60.8 83 41.0
Oeu005138.1 Olea europaea HOM05D015613 ORTHO05D011265 5.7e-08 60.8 73 43.8
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 7.4e-08 60.5 90 38.9
Nitab4.5_0002537g0050 Nicotiana tabacum HOM05D024896 ORTHO05D011265 1.7e-07 59.3 67 46.3
Atru.chr13.431 Acer truncatum HOM05D002484 ORTHO05D002541 3.7e-07 58.2 78 46.2
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 4.8e-07 57.8 73 43.8
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.1e-06 56.6 86 38.4
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 1.8e-06 55.8 72 40.3
AUR62015448 Chenopodium quinoa HOM05D000074 ORTHO05D000696 3.1e-06 55.1 61 39.3
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 3.1e-06 55.1 72 38.9
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 6.9e-06 53.9 80 41.2
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 9.1e-06 53.5 85 35.3
Sopen07g005010 Solanum pennellii HOM05D010303 ORTHO05D011265 9.1e-06 53.5 80 40.0
PGSC0003DMG400008516 Solanum tuberosum HOM05D002484 ORTHO05D002541 9.1e-06 53.5 74 41.9


User provided reference genes

Program Settings