Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 1.2e-95 353.2 182 100.0
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 4.7e-52 208.4 114 92.1
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 1.7e-49 199.9 114 88.6
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 1.7e-49 199.9 114 88.6
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 2.9e-49 199.1 108 90.7
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 3.5e-47 192.2 115 85.2
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 1.0e-38 164.1 94 89.4
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 1.3e-38 163.7 108 69.4
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 8.6e-38 161.0 94 88.3
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.1e-37 160.6 108 70.4
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 1.9e-37 159.8 88 90.9
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 2.5e-37 159.5 108 71.3
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 7.3e-37 157.9 108 68.5
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 1.1e-35 154.1 108 65.7
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.4e-35 153.7 108 64.8
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 2.3e-35 152.9 108 68.5
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 3.1e-35 152.5 108 67.6
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 4.0e-35 152.1 103 71.8
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 6.8e-35 151.4 108 66.7
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 8.9e-35 151.0 108 65.7
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.2e-34 150.6 108 67.6
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.2e-34 150.6 105 69.5
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 2.6e-34 149.4 108 65.7
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 3.4e-34 149.1 108 61.1
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 5.8e-34 148.3 108 67.6
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 5.8e-34 148.3 108 67.6
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 5.8e-34 148.3 108 68.5
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 9.9e-34 147.5 108 66.7
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 9.9e-34 147.5 108 64.8
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.3e-33 147.1 108 66.7
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 2.9e-33 146.0 108 64.8
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 3.8e-33 145.6 108 61.1
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 6.4e-33 144.8 113 61.1
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 4.1e-32 142.1 108 62.0
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 9.2e-32 141.0 108 62.0
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 1.2e-31 140.6 103 63.1
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 1.6e-31 140.2 108 62.0
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.7e-31 139.4 108 62.0
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.7e-31 139.4 108 62.0
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 3.5e-31 139.0 96 67.7
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 3.5e-31 139.0 108 60.2
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 4.6e-31 138.7 108 61.1
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 4.6e-31 138.7 103 67.0
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 4.6e-31 138.7 115 60.0
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 4.6e-31 138.7 107 62.6
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 4.6e-31 138.7 107 60.7
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 6.0e-31 138.3 121 57.9
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 7.8e-31 137.9 108 62.0
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.3e-30 137.1 108 59.3
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 1.7e-30 136.7 103 64.1
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.3e-30 136.3 109 62.4
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 3.0e-30 136.0 111 60.4
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 3.0e-30 136.0 108 61.1
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 3.0e-30 136.0 108 61.1
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 3.9e-30 135.6 108 58.3
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 6.6e-30 134.8 108 59.3
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 6.6e-30 134.8 103 63.1
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 1.1e-29 134.0 108 55.6
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 1.5e-29 133.7 108 56.5
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 1.5e-29 133.7 103 61.2
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.5e-29 133.7 108 58.3
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 1.9e-29 133.3 108 61.1
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 2.5e-29 132.9 108 58.3
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 5.6e-29 131.7 108 58.3
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 7.3e-29 131.3 119 56.3
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 7.3e-29 131.3 108 57.4
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 7.3e-29 131.3 108 58.3
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.6e-28 130.2 109 59.6
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 1.6e-28 130.2 103 61.2
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.1e-28 129.8 108 60.2
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 2.1e-28 129.8 114 56.1
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 3.6e-28 129.0 108 55.6
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 8.1e-28 127.9 113 55.8
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 8.1e-28 127.9 91 65.9
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 8.1e-28 127.9 108 57.4
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 1.1e-27 127.5 114 56.1
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 1.1e-27 127.5 108 56.5
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 1.8e-27 126.7 108 53.7
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 1.8e-27 126.7 108 55.6
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 2.4e-27 126.3 107 56.1
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 2.4e-27 126.3 114 56.1
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 2.4e-27 126.3 114 55.3
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 3.1e-27 125.9 107 55.1
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 3.1e-27 125.9 108 57.4
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 4.0e-27 125.6 114 55.3
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 8.9e-27 124.4 108 54.6
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 1.5e-26 123.6 91 63.7
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 2.0e-26 123.2 114 51.8
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 2.6e-26 122.9 114 53.5
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 2.6e-26 122.9 96 57.3
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 4.4e-26 122.1 108 55.6
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 5.8e-26 121.7 105 55.2
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 1.3e-25 120.6 105 54.3
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 1.7e-25 120.2 108 54.6
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 2.9e-25 119.4 109 57.8
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.1e-24 117.5 108 52.8
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.2e-24 115.5 117 53.8
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 4.2e-24 115.5 108 53.7
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 7.1e-24 114.8 107 52.3
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 1.2e-23 114.0 110 52.7
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 2.1e-23 113.2 109 53.2
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 2.1e-23 113.2 109 53.2
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 2.7e-23 112.8 108 51.9
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.7e-22 110.2 108 52.8
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 5.1e-22 108.6 114 51.8
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 5.1e-22 108.6 108 53.7
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.5e-21 107.1 110 51.8
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 1.5e-21 107.1 110 51.8
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 1.5e-21 107.1 108 50.9
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 2.5e-21 106.3 104 50.0
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 5.6e-21 105.1 108 50.0
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 9.6e-21 104.4 108 49.1
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 9.6e-21 104.4 117 48.7
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 2.1e-20 103.2 132 43.2
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 3.6e-20 102.4 114 46.5
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 3.6e-20 102.4 108 48.1
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 3.6e-20 102.4 108 48.1
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 4.8e-20 102.1 103 52.4
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 4.8e-20 102.1 109 50.5
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 1.4e-19 100.5 112 50.0
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 2.4e-19 99.8 108 48.1
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 2.4e-19 99.8 102 49.0
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 2.6e-18 96.3 108 46.3
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 7.6e-18 94.7 124 46.0
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 2.9e-17 92.8 124 45.2
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 8.4e-17 91.3 86 47.7
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.9e-16 90.1 103 45.6
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 4.2e-16 89.0 88 54.5
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 9.3e-16 87.8 94 52.1
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.2e-15 87.4 62 58.1
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.6e-15 87.0 97 47.4
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 2.7e-15 86.3 73 53.4
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 3.5e-15 85.9 76 57.9
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 4.6e-15 85.5 123 36.6
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 7.9e-15 84.7 84 46.4
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 7.9e-15 84.7 123 35.0
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 3.0e-14 82.8 103 43.7
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 3.0e-14 82.8 103 43.7
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 5.1e-14 82.0 63 63.5
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 5.1e-14 82.0 63 63.5
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 1.1e-13 80.9 63 57.1
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 1.9e-13 80.1 63 57.1
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 5.6e-13 78.6 88 44.3
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 1.5e-10 70.5 55 61.8
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.7e-09 67.0 51 60.8
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 1.1e-08 64.3 77 41.6
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 5.1e-06 55.5 76 42.1


User provided reference genes

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