Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 2.8e-73 278.5 136 100.0
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 6.2e-41 171.0 84 100.0
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 6.2e-41 171.0 84 100.0
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 4.0e-40 168.3 84 98.8
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 8.4e-38 160.6 88 90.9
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 7.9e-36 154.1 89 86.5
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 1.0e-35 153.7 91 85.7
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 2.5e-26 122.5 89 65.2
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 5.7e-26 121.3 84 69.0
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.2e-25 119.4 89 66.3
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 8.2e-25 117.5 70 85.7
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 3.1e-24 115.5 87 66.7
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 5.3e-24 114.8 105 59.0
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 5.3e-24 114.8 105 56.2
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 9.0e-24 114.0 70 85.7
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.5e-23 113.2 84 63.1
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 2.0e-23 112.8 89 60.7
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 2.6e-23 112.5 105 57.1
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 2.6e-23 112.5 105 56.2
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 3.4e-23 112.1 89 62.9
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 4.5e-23 111.7 105 56.2
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 2.9e-22 109.0 89 56.2
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 5.0e-22 108.2 105 55.2
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 5.0e-22 108.2 89 61.8
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 1.1e-21 107.1 105 54.3
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.4e-21 106.7 97 59.8
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 1.9e-21 106.3 105 55.2
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 2.5e-21 105.9 100 58.0
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 7.2e-21 104.4 89 60.7
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 7.2e-21 104.4 89 60.7
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 7.2e-21 104.4 89 57.3
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 9.4e-21 104.0 89 58.4
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.6e-20 103.2 89 59.6
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 2.1e-20 102.8 105 52.4
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.1e-20 102.8 106 53.8
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 2.7e-20 102.4 89 57.3
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 2.7e-20 102.4 105 51.4
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 3.6e-20 102.1 89 56.2
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 7.9e-20 100.9 84 59.5
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 7.9e-20 100.9 88 56.8
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.0e-19 100.5 115 51.3
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.0e-19 100.5 115 51.3
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 2.3e-19 99.4 87 59.8
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.3e-19 99.4 89 55.1
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 3.0e-19 99.0 105 49.5
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 3.0e-19 99.0 87 55.2
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 5.1e-19 98.2 95 56.8
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 5.1e-19 98.2 86 57.0
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 5.1e-19 98.2 72 65.3
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 5.1e-19 98.2 92 56.5
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 5.1e-19 98.2 100 54.0
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 6.7e-19 97.8 89 53.9
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 8.8e-19 97.4 105 50.5
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 8.8e-19 97.4 100 52.0
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 8.8e-19 97.4 89 53.9
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 8.8e-19 97.4 102 52.0
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 8.8e-19 97.4 102 52.0
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 1.1e-18 97.1 105 50.5
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.5e-18 95.9 105 51.4
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.5e-18 95.9 105 51.4
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 3.3e-18 95.5 95 52.6
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 3.3e-18 95.5 89 53.9
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 3.3e-18 95.5 94 54.3
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 4.3e-18 95.1 92 52.2
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 7.4e-18 94.4 95 53.7
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 7.4e-18 94.4 87 54.0
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 7.4e-18 94.4 88 56.8
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 9.7e-18 94.0 89 52.8
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 1.3e-17 93.6 87 54.0
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 1.7e-17 93.2 87 52.9
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 2.8e-17 92.4 92 52.2
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 2.8e-17 92.4 89 50.6
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 2.8e-17 92.4 95 52.6
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 3.7e-17 92.0 92 51.1
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 6.3e-17 91.3 91 51.6
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 8.2e-17 90.9 92 52.2
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 8.2e-17 90.9 84 51.2
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 8.2e-17 90.9 86 52.3
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 8.2e-17 90.9 89 49.4
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 1.1e-16 90.5 84 53.6
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 3.1e-16 89.0 83 49.4
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 3.1e-16 89.0 83 49.4
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 3.1e-16 89.0 71 59.2
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 5.3e-16 88.2 98 50.0
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 6.9e-16 87.8 83 57.8
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 6.9e-16 87.8 92 52.2
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 6.9e-16 87.8 92 51.1
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 1.2e-15 87.0 92 51.1
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.5e-15 86.7 67 62.7
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.5e-15 86.7 67 61.2
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 1.5e-15 86.7 94 47.9
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 3.4e-15 85.5 94 46.8
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 3.4e-15 85.5 98 48.0
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 3.4e-15 85.5 111 40.5
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 5.9e-15 84.7 77 55.8
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 1.0e-14 84.0 93 51.6
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 1.3e-14 83.6 76 59.2
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 1.7e-14 83.2 88 54.5
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 2.2e-14 82.8 105 46.7
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 2.9e-14 82.4 85 52.9
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 5.0e-14 81.6 77 53.2
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 5.0e-14 81.6 105 44.8
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 8.5e-14 80.9 113 45.1
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 5.5e-13 78.2 100 46.0
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.6e-12 76.6 108 43.5
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 2.7e-12 75.9 81 50.6
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.7e-12 75.1 105 44.8
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 7.9e-12 74.3 89 44.9
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 1.0e-11 73.9 84 46.4
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 1.0e-11 73.9 105 43.8
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 1.0e-11 73.9 88 46.6
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.8e-11 73.2 55 61.8
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 1.8e-11 73.2 87 46.0
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 1.8e-11 73.2 100 44.0
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 2.3e-11 72.8 89 46.1
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 3.0e-11 72.4 105 43.8
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 5.1e-11 71.6 84 50.0
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 5.1e-11 71.6 84 50.0
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 5.1e-11 71.6 105 43.8
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 6.7e-11 71.2 89 41.6
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 1.1e-10 70.5 59 59.3
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 2.6e-10 69.3 89 40.4
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 2.6e-10 69.3 89 40.4
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 2.6e-10 69.3 86 41.9
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 1.7e-09 66.6 89 40.4
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 1.7e-09 66.6 97 41.2
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 2.8e-09 65.9 95 37.9
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 2.4e-08 62.8 67 47.8
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 2.4e-08 62.8 109 38.5
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 2.4e-08 62.8 109 38.5
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 3.1e-08 62.4 89 41.6
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 3.1e-08 62.4 90 43.3
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 4.1e-08 62.0 110 36.4
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 7.0e-08 61.2 105 36.2
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 9.1e-08 60.8 67 46.3
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 1.2e-07 60.5 98 37.8
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 2.0e-07 59.7 114 32.5
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 2.6e-07 59.3 83 47.0
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 5.9e-07 58.2 58 51.7
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 7.7e-07 57.8 65 41.5


User provided reference genes

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