Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 0.0e+00 1338.9 706 100.0
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 2.8e-249 865.5 516 85.1
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 3.7e-145 519.6 337 81.6
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 4.6e-127 459.5 443 56.4
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 7.3e-117 425.6 713 37.6
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.2e-92 342.8 662 33.7
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 1.1e-91 342.0 645 34.6
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 3.1e-91 340.5 636 34.6
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.2e-88 330.5 649 33.3
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.2e-88 330.5 692 32.9
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 1.2e-87 328.6 633 32.9
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.7e-87 327.4 659 33.7
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 6.0e-87 326.2 644 34.0
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.1e-86 323.2 651 32.0
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 1.6e-84 318.2 616 33.1
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 2.8e-84 317.4 617 34.4
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 5.3e-83 313.2 648 32.6
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 1.5e-82 311.6 589 31.9
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.3e-80 302.4 632 32.3
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 1.2e-79 302.0 610 33.0
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-77 295.0 625 32.0
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 9.6e-77 292.4 641 32.6
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.8e-74 283.1 605 31.7
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-72 277.7 598 31.9
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.7e-71 274.2 496 34.5
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.8e-70 271.6 661 31.0
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 9.0e-67 259.2 534 32.2
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.9e-65 254.2 590 30.7
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 3.8e-65 253.8 511 36.2
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 2.7e-63 247.7 544 33.1
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 8.7e-62 242.7 547 31.1
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 6.3e-60 236.5 599 29.5
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.0e-59 232.6 583 28.6
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 7.7e-58 229.6 240 48.3
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 1.0e-57 229.2 297 44.4
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.3e-57 228.8 585 30.6
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.3e-57 228.8 634 28.9
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 1.7e-57 228.4 238 48.7
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 1.1e-56 225.7 278 45.0
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.6e-55 220.3 522 30.7
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 6.1e-55 219.9 608 28.9
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 7.9e-55 219.5 334 41.3
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-54 219.2 594 28.5
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-54 218.8 616 28.6
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 5.7e-53 213.4 213 46.9
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 3.4e-50 204.1 536 30.8
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 4.5e-50 203.8 568 28.7
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.3e-49 202.2 407 35.4
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.8e-49 200.7 238 42.9
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 1.1e-48 199.1 567 27.9
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 1.4e-48 198.7 313 37.1
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 4.7e-47 193.7 565 28.1
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 3.9e-46 190.7 336 36.3
Cc04_g13130 Coffea canephora HOM05D003326 ORTHO05D001185 2.0e-45 188.3 153 72.5
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 3.3e-45 187.6 287 36.2
Cc00_g06960 Coffea canephora HOM05D003326 ORTHO05D001185 5.7e-45 186.8 165 58.2
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.3e-44 185.7 336 33.6
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 8.2e-44 183.0 460 27.4
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 3.1e-43 181.0 423 29.3
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 5.3e-43 180.3 223 41.7
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-42 179.1 331 36.0
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.5e-42 177.2 295 37.3
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 1.3e-41 175.6 267 39.7
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 4.2e-40 170.6 210 42.4
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 7.2e-40 169.9 571 25.0
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-39 169.1 488 28.5
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.1e-39 166.8 287 38.0
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-38 166.0 262 37.0
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-38 165.6 238 39.9
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.8e-38 165.2 409 30.6
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.3e-38 164.9 210 40.0
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 6.7e-38 163.3 185 47.6
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 1.3e-36 159.1 438 28.1
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.8e-36 157.9 207 39.6
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.8e-36 157.1 436 28.4
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.8e-36 157.1 436 28.4
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.2e-36 156.4 410 30.7
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 7.0e-35 153.3 466 24.9
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.7e-34 149.8 304 31.6
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-33 148.7 551 25.0
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.9e-33 147.9 187 41.2
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.5e-33 146.7 497 26.6
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 3.2e-32 144.4 515 24.9
BcaB05g22490 Brassica carinata HOM05D003376 ORTHO05D001185 8.0e-31 139.8 189 37.6
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 4.0e-30 137.5 366 28.4
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 4.0e-30 137.5 355 28.2
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 5.2e-30 137.1 355 28.2
HanXRQChr09g0262541 Helianthus annuus HOM05D003326 ORTHO05D001185 2.2e-28 131.7 432 25.2
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 2.8e-28 131.3 132 52.3
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 2.8e-28 131.3 529 23.3
BolC1t03802H Brassica oleracea HOM05D003376 ORTHO05D001185 3.7e-28 131.0 272 31.6
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 3.7e-28 131.0 432 25.2
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.8e-28 130.6 337 27.6
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 8.3e-28 129.8 432 25.0
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.4e-27 129.0 251 31.5
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 3.1e-27 127.9 345 28.1
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 7.0e-27 126.7 366 26.8
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.6e-26 125.6 267 29.6
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-25 122.9 191 34.0
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 1.0e-25 122.9 415 25.3
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-25 122.1 296 31.1
HanXRQChr09g0262531 Helianthus annuus HOM05D003376 ORTHO05D001185 1.7e-25 122.1 411 24.8
Thecc.07G158200 Theobroma cacao HOM05D005324 ORTHO05D001185 2.5e-24 118.2 181 32.6
ECA236G2821 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.2e-24 117.5 274 29.9
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.5e-24 117.1 342 29.2
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-24 116.7 123 48.8
Atru.chr11.226 Acer truncatum HOM05D005324 ORTHO05D001185 1.6e-23 115.5 89 60.7
CAN.G505.24 Capsicum annuum HOM05D005324 ORTHO05D001185 1.6e-23 115.5 93 54.8
BolC1t03750H Brassica oleracea HOM05D003376 ORTHO05D001185 2.7e-23 114.8 221 31.7
Lj2g0023412 Lotus japonicus HOM05D005324 ORTHO05D018017 1.8e-22 112.1 139 42.4
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-22 110.9 401 24.2
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 8.8e-22 109.8 220 28.2
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.7e-21 107.1 230 28.3
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.7e-21 107.1 230 28.3
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 2.8e-20 104.8 332 26.5
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 4.5e-18 97.4 71 62.0
ECA234G2242 Erigeron canadensis HOM05D000088 ORTHO05D001030 5.9e-18 97.1 238 28.6
Atru.chr1.2076 Acer truncatum HOM05D005324 ORTHO05D001185 1.7e-17 95.5 103 48.5
Cc00_g07770 Coffea canephora HOM05D005324 ORTHO05D011089 1.7e-17 95.5 46 95.7
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 6.6e-17 93.6 166 35.5
Cc00_g18200 Coffea canephora HOM05D013520 ORTHO05D011089 4.3e-16 90.9 42 100.0
Atru.chr5.1825 Acer truncatum HOM05D005324 ORTHO05D001185 9.5e-16 89.7 188 29.3
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 1.2e-15 89.4 238 29.0
Cc00_g24840 Coffea canephora HOM05D003376 ORTHO05D011089 2.1e-15 88.6 46 87.0
Atru.chr13.2474 Acer truncatum HOM05D005324 ORTHO05D001185 3.6e-15 87.8 146 39.0
Cc00_g19430 Coffea canephora HOM05D003326 ORTHO05D001185 6.1e-15 87.0 45 91.1
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 8.0e-15 86.7 297 25.9
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 8.0e-15 86.7 192 29.2
BcaB04g18321 Brassica carinata HOM05D003376 ORTHO05D001185 1.8e-14 85.5 157 33.1
A01p13220 Brassica napus HOM05D003376 ORTHO05D001185 1.8e-14 85.5 78 46.2
A01p13240 Brassica napus HOM05D003376 ORTHO05D001185 1.8e-14 85.5 78 46.2
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 1.8e-14 85.5 148 33.1
Atru.chr9.334 Acer truncatum HOM05D005324 ORTHO05D001185 2.3e-14 85.1 158 29.7
MBI14_g23481_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 4.0e-14 84.3 149 36.9
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 5.2e-14 84.0 151 29.8
MBI03_g38333_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 1.5e-13 82.4 194 30.4
COL.COLO4_27206 Corchorus olitorius HOM05D003326 ORTHO05D001185 4.4e-13 80.9 173 29.5
BraA06t26272Z Brassica rapa HOM05D003376 ORTHO05D001185 9.8e-13 79.7 119 36.1
Atru.chr3.2328 Acer truncatum HOM05D005324 ORTHO05D001185 6.4e-12 77.0 102 39.2
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 8.3e-12 76.6 268 29.1
Ca_20262_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.4e-11 73.9 178 33.7
ClCG03G013730 Citrullus lanatus HOM05D000158 ORTHO05D000002 5.4e-11 73.9 315 25.1
ClCG10G003450 Citrullus lanatus HOM05D000158 ORTHO05D000002 5.4e-11 73.9 315 25.1
BraA09t38519Z Brassica rapa HOM05D003376 ORTHO05D001185 2.0e-10 72.0 61 49.2
Duzib187G1529 Durio zibethinus HOM05D005324 ORTHO05D001185 2.7e-10 71.6 99 40.4
Atru.chr1.2263 Acer truncatum HOM05D005324 ORTHO05D001185 7.8e-10 70.1 57 57.9
Ca_00995_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-09 69.7 139 36.7
C01p15920 Brassica napus HOM05D003376 ORTHO05D001185 1.7e-09 68.9 61 49.2
BraA05t20180Z Brassica rapa HOM05D003376 ORTHO05D001185 1.7e-09 68.9 61 47.5
Ca_28515_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.0e-09 68.2 78 39.7
BraA01t02300Z Brassica rapa HOM05D003376 ORTHO05D001185 6.6e-09 67.0 93 37.6
BolC1t01546H Brassica oleracea HOM05D003376 ORTHO05D001185 1.1e-08 66.2 61 47.5
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 1.9e-08 65.5 216 27.3
Ca_15185_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-08 65.5 46 63.0
BraA01t01266Z Brassica rapa HOM05D003376 ORTHO05D001185 2.5e-08 65.1 61 47.5
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-08 65.1 169 32.5
BcaB01g00899 Brassica carinata HOM05D003376 ORTHO05D001185 3.3e-08 64.7 161 29.8
Carub.0002s1007 Capsella rubella HOM05D003376 ORTHO05D001185 3.3e-08 64.7 181 26.0
Ca_19340_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.3e-08 64.7 239 28.0
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 4.3e-08 64.3 105 30.5
Atru.chr1.3842 Acer truncatum HOM05D000004 ORTHO05D001185 5.6e-08 63.9 46 63.0
A01p23930 Brassica napus HOM05D003376 ORTHO05D001185 5.6e-08 63.9 93 36.6
Medtr3g436690 Medicago truncatula HOM05D005324 ORTHO05D001185 9.5e-08 63.2 128 29.7
PGSC0003DMG400041174 Solanum tuberosum HOM05D003888 ORTHO05D012529 9.5e-08 63.2 138 33.3
Atru.chr11.502 Acer truncatum HOM05D005324 ORTHO05D001185 3.6e-07 61.2 112 40.2
A05p12400 Brassica napus HOM05D003376 ORTHO05D001185 8.0e-07 60.1 145 30.3
QL07p038177 Quercus lobata HOM05D003376 ORTHO05D000002 1.0e-06 59.7 46 65.2
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.4e-06 59.3 219 25.1
BolC1t03800H Brassica oleracea HOM05D003376 ORTHO05D001185 1.8e-06 58.9 87 34.5
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-06 58.2 39 64.1
Duzib264G0189 Durio zibethinus HOM05D005324 ORTHO05D001185 8.9e-06 56.6 46 63.0


User provided reference genes

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