Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g33910 Coffea canephora HOM05D005738 ORTHO05D007135 1.0e-44 183.0 90 100.0
Cc01_g00500 Coffea canephora HOM05D005738 ORTHO05D007135 1.3e-39 166.0 85 94.1
Cc00_g25960 Coffea canephora HOM05D005738 ORTHO05D007135 8.6e-39 163.3 85 94.1
Cc00_g35260 Coffea canephora HOM05D005738 ORTHO05D007135 1.1e-38 162.9 85 94.1
Cc01_g02300 Coffea canephora HOM05D005738 ORTHO05D007135 2.5e-38 161.8 85 92.9
Cc00_g24810 Coffea canephora HOM05D005738 ORTHO05D007135 1.2e-37 159.5 85 90.6
MSTRG.706 Avicennia marina HOM05D005738 ORTHO05D007135 9.8e-35 149.8 85 78.8
Oeu055111.1 Olea europaea HOM05D005738 ORTHO05D007135 2.9e-34 148.3 85 80.0
COL.COLO4_22957 Corchorus olitorius HOM05D005738 ORTHO05D007135 8.3e-34 146.7 85 81.2
PGR102G3221 Punica granatum HOM05D005738 ORTHO05D007135 1.1e-33 146.4 85 81.2
MBI05_g34363_MAGBIO Magnolia biondii HOM05D005738 ORTHO05D007135 1.4e-33 146.0 85 80.0
Actinidia31900 Actinidia chinensis HOM05D005738 ORTHO05D007135 1.9e-33 145.6 85 76.5
Migut.L01281 Erythranthe guttata HOM05D005738 ORTHO05D007135 1.9e-33 145.6 85 80.0
PSO339G5942 Papaver somniferum HOM05D005738 ORTHO05D007135 3.2e-33 144.8 85 80.0
Duzib251G0762 Durio zibethinus HOM05D005738 ORTHO05D007135 4.1e-33 144.4 85 77.6
Gorai.008G180500 Gossypium raimondii HOM05D005738 ORTHO05D007135 5.4e-33 144.1 83 79.5
Lj3A1037T78 Lonicera japonica HOM05D005738 ORTHO05D007135 5.4e-33 144.1 85 80.0
QL03p068731 Quercus lobata HOM05D005738 ORTHO05D007135 5.4e-33 144.1 84 81.0
CSS0032710 Camellia sinensis var. sinensis HOM05D005738 ORTHO05D007135 9.2e-33 143.3 83 77.1
Thecc.02G344900 Theobroma cacao HOM05D005738 ORTHO05D007135 9.2e-33 143.3 85 77.6
Gohir.A12G164500 Gossypium hirsutum HOM05D005738 ORTHO05D007135 1.2e-32 142.9 83 78.3
TPR.G39224 Trifolium pratense HOM05D005738 ORTHO05D007135 1.6e-32 142.5 85 76.5
Haze_12004 Corylus avellana HOM05D005738 ORTHO05D007135 2.7e-32 141.7 85 78.8
THA.LOC104801796 Tarenaya hassleriana HOM05D005738 ORTHO05D007135 2.7e-32 141.7 85 78.8
Medtr5g041290 Medicago truncatula HOM05D005738 ORTHO05D007135 3.5e-32 141.4 85 76.5
Sed0019595 Sechium edule HOM05D005738 ORTHO05D007135 3.5e-32 141.4 85 78.8
GSVIVG01023016001 Vitis vinifera HOM05D005738 ORTHO05D007135 3.5e-32 141.4 85 80.0
Ca_04813_v3 Cicer arietinum L. HOM05D005738 ORTHO05D007135 4.6e-32 141.0 85 75.3
Gohir.D12G167600 Gossypium hirsutum HOM05D005738 ORTHO05D007135 6.0e-32 140.6 83 78.3
Psat2g119200 Pisum sativum HOM05D005738 ORTHO05D007135 6.0e-32 140.6 85 75.3
Cpa.g.sc128.36 Carica papaya HOM05D005738 ORTHO05D007135 1.0e-31 139.8 85 77.6
Solyc05g007910.3 Solanum lycopersicum HOM05D005738 ORTHO05D007135 1.0e-31 139.8 82 76.8
CiPaw.05G134200 Carya illinoinensis HOM05D005738 ORTHO05D007135 1.3e-31 139.4 85 76.5
unitig_22.g6513 Utricularia gibba HOM05D005738 ORTHO05D007135 1.3e-31 139.4 85 72.9
Cfa008972 Carpinus fangiana HOM05D005738 ORTHO05D007135 2.3e-31 138.7 85 78.8
CDE04G3278 Ceratophyllum demersum HOM05D005738 ORTHO05D007135 2.3e-31 138.7 83 75.9
Eucgr.B03215 Eucalyptus grandis HOM05D005738 ORTHO05D007135 2.3e-31 138.7 83 74.7
Nn4g23184 Nelumbo nucifera HOM05D005738 ORTHO05D007135 2.3e-31 138.7 85 78.8
SGA_v2.0_scaffold31G12777 Striga asiatica HOM05D005738 ORTHO05D007135 2.3e-31 138.7 85 74.1
ClCG05G024220 Citrullus lanatus HOM05D005738 ORTHO05D007135 3.0e-31 138.3 82 78.0
Thhalv10008948m.g Eutrema salsugineum HOM05D005738 ORTHO05D007135 3.0e-31 138.3 83 78.3
BcaB08g34377 Brassica carinata HOM05D005738 ORTHO05D007135 3.9e-31 137.9 85 77.6
MD16G1072000 Malus domestica HOM05D005738 ORTHO05D007135 3.9e-31 137.9 85 76.5
Sp1g12550 Schrenkiella parvula HOM05D005738 ORTHO05D007135 3.9e-31 137.9 83 78.3
PGSC0003DMG400018425 Solanum tuberosum HOM05D005738 ORTHO05D007135 3.9e-31 137.9 82 75.6
Lalb_Chr10g0098351 Lupinus albus HOM05D005738 ORTHO05D007135 5.1e-31 137.5 85 70.6
CAN.G1604.4 Capsicum annuum HOM05D005738 ORTHO05D007135 6.6e-31 137.1 85 75.3
A09p62360 Brassica napus HOM05D005738 ORTHO05D007135 8.6e-31 136.7 83 77.1
BraA09t41601Z Brassica rapa HOM05D005738 ORTHO05D007135 8.6e-31 136.7 83 77.1
Sopen05g003760 Solanum pennellii HOM05D005738 ORTHO05D007135 8.6e-31 136.7 82 75.6
C08p45920 Brassica napus HOM05D005738 ORTHO05D007135 1.1e-30 136.3 83 75.9
BolC8t52144H Brassica oleracea HOM05D005738 ORTHO05D007135 1.1e-30 136.3 83 75.9
Nitab4.5_0000040g0260 Nicotiana tabacum HOM05D000556 ORTHO05D007135 1.5e-30 136.0 84 75.0
RcHm_v2.0_Chr6g0288631 Rosa chinensis HOM05D005738 ORTHO05D007135 1.5e-30 136.0 85 75.3
CARHR014620 Cardamine hirsuta HOM05D005738 ORTHO05D007135 1.9e-30 135.6 83 77.1
HPP92_003354 Vanilla planifolia HOM05D005738 ORTHO05D007135 1.9e-30 135.6 85 70.6
HPP92_003355 Vanilla planifolia HOM05D005738 ORTHO05D007399 1.9e-30 135.6 85 70.6
BcaC07g41589 Brassica carinata HOM05D005738 ORTHO05D007135 2.5e-30 135.2 83 75.9
FAN07G1335 Fragaria x ananassa HOM05D005738 ORTHO05D007135 2.5e-30 135.2 85 74.1
FAN22G1556 Fragaria x ananassa HOM05D005738 ORTHO05D007135 2.5e-30 135.2 85 74.1
Aqoxy3G03402 Aquilegia oxysepala HOM05D005738 ORTHO05D007135 3.3e-30 134.8 85 74.1
MELO3C012102.2 Cucumis melo HOM05D005738 ORTHO05D007135 3.3e-30 134.8 85 76.5
Glyma.02G108200 Glycine max HOM05D005738 ORTHO05D007135 3.3e-30 134.8 86 74.4
SGA_v2.0_scaffold47G17610 Striga asiatica HOM05D005738 ORTHO05D007135 3.3e-30 134.8 85 71.8
Hma1.2p1_0795F.1_g218920 Hydrangea macrophylla HOM05D005738 ORTHO05D007135 4.3e-30 134.4 85 74.1
Nitab4.5_0001555g0030 Nicotiana tabacum HOM05D005738 ORTHO05D007135 4.3e-30 134.4 85 74.1
VMungo1215G0821 Vigna mungo HOM05D005738 ORTHO05D007135 4.3e-30 134.4 85 75.3
ECA232G4216 Erigeron canadensis HOM05D005738 ORTHO05D007135 5.6e-30 134.0 85 74.1
FvH4_5g23030 Fragaria vesca HOM05D005738 ORTHO05D007135 5.6e-30 134.0 85 72.9
RcHm_v2.0_Chr4g0439701 Rosa chinensis HOM05D005738 ORTHO05D007135 5.6e-30 134.0 85 74.1
AT1G14205 Arabidopsis thaliana HOM05D005738 ORTHO05D007135 7.3e-30 133.7 83 75.9
FAN17G0023 Fragaria x ananassa HOM05D005738 ORTHO05D007135 7.3e-30 133.7 85 72.9
HanXRQChr09g0256931 Helianthus annuus HOM05D005738 ORTHO05D007135 7.3e-30 133.7 85 74.1
Lj2g0006642 Lotus japonicus HOM05D005738 ORTHO05D007135 7.3e-30 133.7 85 72.9
CsaV3_5G032760 Cucumis sativus L. HOM05D005738 ORTHO05D007135 9.5e-30 133.3 82 75.6
Nitab4.5_0003950g0020 Nicotiana tabacum HOM05D005738 ORTHO05D007135 9.5e-30 133.3 84 73.8
Atru.chr11.1777 Acer truncatum HOM05D005738 ORTHO05D007135 1.2e-29 132.9 82 72.0
FvH4_4g31280 Fragaria vesca HOM05D005738 ORTHO05D007135 2.1e-29 132.1 85 71.8
Phvul.003G017400 Phaseolus vulgaris HOM05D005738 ORTHO05D007135 2.1e-29 132.1 86 74.4
Cc00_g33980 Coffea canephora HOM05D005738 ORTHO05D007135 2.8e-29 131.7 85 81.2
AL1G26090 Arabidopsis lyrata HOM05D005738 ORTHO05D007135 3.6e-29 131.3 83 72.3
CANSAT64G2506 Cannabis sativa HOM05D005738 ORTHO05D007135 4.7e-29 131.0 85 72.9
Carub.0001s1389 Capsella rubella HOM05D005738 ORTHO05D007135 4.7e-29 131.0 83 73.5
DCAR_007157 Daucus carota HOM05D005738 ORTHO05D007135 4.7e-29 131.0 82 74.4
SalBow2G2920 Salvia bowleyana HOM05D005738 ORTHO05D007135 6.2e-29 130.6 85 71.8
Lsat_1_v5_gn_4_145980 Lactuca sativa HOM05D005738 ORTHO05D007135 8.1e-29 130.2 85 72.9
ATR0681G265 Amborella trichopoda HOM05D005738 ORTHO05D007135 1.4e-28 129.4 83 73.5
arahy.Tifrunner.gnm1.ann1.C6ZMY5 Arachis hypogaea HOM05D005738 ORTHO05D007135 1.4e-28 129.4 83 74.7
arahy.Tifrunner.gnm1.ann1.L6MMNY Arachis hypogaea HOM05D005738 ORTHO05D007135 1.4e-28 129.4 83 74.7
arahy.Tifrunner.gnm1.ann1.NUP0F7 Arachis hypogaea HOM05D005738 ORTHO05D007135 1.4e-28 129.4 83 74.7
Potri.008G087100 Populus trichocarpa HOM05D005738 ORTHO05D007135 2.3e-28 128.6 85 72.9
Sc14g0008110 Simmondsia chinensis HOM05D005738 ORTHO05D007135 2.3e-28 128.6 85 70.6
Aa31LG1G840 Aethionema arabicum HOM05D005738 ORTHO05D007135 4.0e-28 127.9 87 70.1
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.0e-28 127.9 80 72.5
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.0e-28 127.9 80 72.5
Peaxi162Scf00222g00523 Petunia axillaris HOM05D005738 ORTHO05D007135 4.0e-28 127.9 100 64.0
Ciclev10032918m.g Citrus clementina HOM05D005738 ORTHO05D007135 6.8e-28 127.1 84 72.6
arahy.Tifrunner.gnm1.ann1.YAXL0T Arachis hypogaea HOM05D005738 ORTHO05D007135 1.2e-27 126.3 82 74.4
arahy.Tifrunner.gnm1.ann1.M1YF1C Arachis hypogaea HOM05D005738 ORTHO05D007135 2.0e-27 125.6 83 72.3
Hund25229 Selenicereus undatus HOM05D005738 ORTHO05D007135 2.0e-27 125.6 85 70.6
TWI31G0211 Tripterygium wilfordii HOM05D005738 ORTHO05D007135 2.0e-27 125.6 85 70.6
FAN24G2090 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.4e-27 124.8 85 67.1
AUR62005804 Chenopodium quinoa HOM05D005738 ORTHO05D007135 4.4e-27 124.4 85 67.1
Rhsim12G0064100 Rhododendron simsii HOM05D005738 ORTHO05D007135 4.4e-27 124.4 82 67.1
FAN13G2547 Fragaria x ananassa HOM05D005738 ORTHO05D007135 7.5e-27 123.6 80 70.0
Os09g0439050 Oryza sativa ssp. japonica HOM05D005738 ORTHO05D007135 9.9e-27 123.2 85 67.1
FAN22G1611 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.3e-26 122.9 85 69.4
EL10Ac2g03567 Beta vulgaris HOM05D005738 ORTHO05D007135 1.7e-26 122.5 85 67.1
FAN07G1573 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.7e-26 122.5 85 68.2
Os03g0169400 Oryza sativa ssp. japonica HOM05D005738 ORTHO05D007135 1.7e-26 122.5 85 65.9
AUR62032794 Chenopodium quinoa HOM05D005738 ORTHO05D007135 2.2e-26 122.1 85 65.9
FvH4_7g03450 Fragaria vesca HOM05D005738 ORTHO05D007135 2.2e-26 122.1 85 64.7
FvH4_6g19250 Fragaria vesca HOM05D005738 ORTHO05D007135 1.2e-24 116.3 82 65.9
vmacro01263 Vaccinium macrocarpon HOM05D005738 ORTHO05D007135 2.1e-24 115.5 97 59.8
Sabra08G0064900 Salix brachista HOM05D005738 ORTHO05D007135 4.6e-24 114.4 135 48.1
Dinv34149 Davidia involucrata HOM05D005738 ORTHO05D007135 3.9e-23 111.3 66 80.3
FAN14G0628 Fragaria x ananassa HOM05D005738 ORTHO05D007135 9.5e-22 106.7 91 58.2
FAN17G2055 Fragaria x ananassa HOM05D005738 ORTHO05D007135 8.1e-21 103.6 94 57.4
Zm00001eb005360 Zea mays HOM05D005738 ORTHO05D007135 8.9e-20 100.1 117 46.2
FAN08G3274 Fragaria x ananassa HOM05D005738 ORTHO05D007135 9.2e-17 90.1 63 61.9
SEGI_26874 Sequoiadendron giganteum HOM05D005738 ORTHO05D007135 1.6e-16 89.4 83 54.2
Zm00001eb402360 Zea mays HOM05D005738 ORTHO05D007135 3.5e-16 88.2 75 62.7
FAN04G0710 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.1e-14 83.2 70 57.1
Medtr5g041280 Medicago truncatula HOM05D005738 ORTHO05D007135 2.2e-10 68.9 66 50.0
EL10Ac3g06214 Beta vulgaris HOM05D005495 ORTHO05D006878 3.9e-07 58.2 83 37.3
HPP92_026860 Vanilla planifolia HOM05D005495 ORTHO05D006878 6.6e-07 57.4 85 37.6
FvH4_4g31170 Fragaria vesca HOM05D005738 ORTHO05D007135 8.7e-07 57.0 42 64.3
FAN12G3611 Fragaria x ananassa HOM05D005738 ORTHO05D007135 8.7e-07 57.0 42 64.3
Prupe.1G275600 Prunus persica HOM05D005738 ORTHO05D007135 8.7e-07 57.0 36 69.4
Atru.chr4.3197 Acer truncatum HOM05D005495 ORTHO05D006878 1.9e-06 55.8 83 36.1
ATR0561G067 Amborella trichopoda HOM05D005495 ORTHO05D006878 1.9e-06 55.8 83 36.1
Mapoly0060s0071 Marchantia polymorpha HOM05D005495 ORTHO05D006878 1.9e-06 55.8 85 35.3
Pp3c11_5070 Physcomitrium patens HOM05D005495 ORTHO05D006878 4.3e-06 54.7 83 36.1
Lalb_Chr08g0232951 Lupinus albus HOM05D005495 ORTHO05D006878 5.6e-06 54.3 83 38.6
PGR004G2778 Punica granatum HOM05D005495 ORTHO05D006878 5.6e-06 54.3 83 36.1
SEGI_23609 Sequoiadendron giganteum HOM05D005495 ORTHO05D006878 5.6e-06 54.3 83 36.1
Gohir.D08G091100 Gossypium hirsutum HOM05D005495 ORTHO05D006878 7.3e-06 53.9 83 34.9
Lalb_Chr11g0073801 Lupinus albus HOM05D005495 ORTHO05D006878 9.6e-06 53.5 83 37.3
MD16G1131500 Malus domestica HOM05D005495 ORTHO05D006878 9.6e-06 53.5 83 34.9
Psat1g016560 Pisum sativum HOM05D005495 ORTHO05D006878 9.6e-06 53.5 83 34.9


User provided reference genes

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