Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 8.0e-67 256.9 126 100.0
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 8.8e-66 253.4 126 98.4
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 2.4e-18 95.9 79 65.8
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 4.0e-18 95.1 70 70.0
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.0e-17 92.8 52 82.7
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 4.4e-17 91.7 69 68.1
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 7.6e-17 90.9 54 74.1
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.3e-16 90.1 56 76.8
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 1.7e-16 89.7 52 73.1
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 2.2e-16 89.4 58 69.0
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.2e-16 89.4 52 80.8
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.2e-16 89.4 59 74.6
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 2.9e-16 89.0 52 78.8
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 3.8e-16 88.6 55 70.9
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 3.8e-16 88.6 55 72.7
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 3.8e-16 88.6 64 67.2
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 4.9e-16 88.2 57 71.9
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 4.9e-16 88.2 59 72.9
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 4.9e-16 88.2 59 74.6
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 4.9e-16 88.2 63 66.7
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 6.4e-16 87.8 54 77.8
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 8.4e-16 87.4 67 64.2
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 8.4e-16 87.4 67 64.2
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 8.4e-16 87.4 52 78.8
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 8.4e-16 87.4 65 64.6
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.4e-16 87.4 59 72.9
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 8.4e-16 87.4 56 75.0
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 8.4e-16 87.4 56 75.0
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.1e-15 87.0 57 70.2
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 1.1e-15 87.0 57 70.2
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.4e-15 86.7 56 69.6
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.4e-15 86.7 59 71.2
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-15 86.7 59 71.2
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 1.4e-15 86.7 52 76.9
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.4e-15 86.7 52 76.9
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.9e-15 86.3 52 76.9
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 1.9e-15 86.3 53 73.6
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 1.9e-15 86.3 55 67.3
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.9e-15 86.3 52 75.0
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 2.4e-15 85.9 52 78.8
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 2.4e-15 85.9 57 68.4
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.4e-15 85.9 64 68.8
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 2.4e-15 85.9 53 73.6
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 3.2e-15 85.5 56 75.0
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 3.2e-15 85.5 56 75.0
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 3.2e-15 85.5 52 73.1
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 3.2e-15 85.5 64 60.9
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 5.4e-15 84.7 57 68.4
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.4e-15 84.7 56 69.6
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 5.4e-15 84.7 64 59.4
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 7.1e-15 84.3 56 67.9
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 7.1e-15 84.3 57 68.4
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 7.1e-15 84.3 50 76.0
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 9.3e-15 84.0 56 71.4
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 9.3e-15 84.0 52 76.9
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 9.3e-15 84.0 62 64.5
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 9.3e-15 84.0 56 66.1
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.2e-14 83.6 59 64.4
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.2e-14 83.6 59 71.2
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.2e-14 83.6 56 69.6
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.2e-14 83.6 51 72.5
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 1.2e-14 83.6 51 72.5
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.2e-14 83.6 60 68.3
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.6e-14 83.2 52 73.1
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.6e-14 83.2 52 75.0
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.1e-14 82.8 52 71.2
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 2.1e-14 82.8 52 71.2
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.1e-14 82.8 56 73.2
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 2.1e-14 82.8 57 66.7
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.1e-14 82.8 52 69.2
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 2.1e-14 82.8 56 71.4
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 2.7e-14 82.4 60 63.3
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 3.5e-14 82.0 54 70.4
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 4.6e-14 81.6 51 74.5
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 6.0e-14 81.3 60 63.3
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 6.0e-14 81.3 52 67.3
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 7.9e-14 80.9 50 72.0
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 7.9e-14 80.9 52 69.2
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 1.0e-13 80.5 53 64.2
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.7e-13 79.7 55 65.5
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 2.3e-13 79.3 52 63.5
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 2.3e-13 79.3 56 66.1
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 5.1e-13 78.2 52 69.2
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 6.6e-13 77.8 51 68.6
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 1.1e-12 77.0 50 66.0
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.1e-12 77.0 50 72.0
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.5e-12 76.6 59 62.7
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.5e-12 76.6 51 64.7
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 1.9e-12 76.3 52 63.5
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 1.9e-12 76.3 67 59.7
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.5e-12 75.9 51 64.7
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 2.5e-12 75.9 59 62.7
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.5e-12 75.9 59 62.7
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.3e-12 75.1 59 62.7
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.3e-11 73.6 51 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 1.6e-11 73.2 56 55.4
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 1.6e-11 73.2 56 55.4
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.8e-10 69.7 52 61.5
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.5e-09 66.6 59 54.2
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 2.0e-09 66.2 52 67.3
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 2.9e-08 62.4 54 48.1
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 3.8e-08 62.0 52 57.7
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 4.9e-08 61.6 52 55.8


User provided reference genes

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