Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g32960 Coffea canephora HOM05D003326 ORTHO05D001185 2.0e-169 599.0 290 100.0
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 6.6e-141 504.2 341 74.2
Cc00_g18930 Coffea canephora HOM05D003326 ORTHO05D001185 3.1e-130 468.8 343 69.7
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 5.6e-124 448.0 276 80.8
Cc04_g13130 Coffea canephora HOM05D003326 ORTHO05D001185 2.1e-123 446.0 297 76.1
Cc00_g02470 Coffea canephora HOM05D003326 ORTHO05D001185 1.2e-110 403.7 289 68.2
Cc00_g33430 Coffea canephora HOM05D003326 ORTHO05D001185 1.2e-102 377.1 234 80.3
Cc00_g25430 Coffea canephora HOM05D003326 ORTHO05D001185 1.2e-76 290.8 241 60.6
Cc00_g06960 Coffea canephora HOM05D003326 ORTHO05D001185 1.7e-72 276.9 199 66.3
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 6.3e-67 258.5 223 57.4
Cc00_g31480 Coffea canephora HOM05D003326 ORTHO05D001185 2.7e-57 226.5 311 42.1
Cc00_g26310 Coffea canephora HOM05D003326 ORTHO05D001185 2.9e-56 223.0 283 45.6
Cc04_g13630 Coffea canephora HOM05D003326 ORTHO05D001185 3.4e-52 209.5 196 55.6
Cc00_g19450 Coffea canephora HOM05D003376 ORTHO05D001185 6.2e-46 188.7 247 43.7
Cc00_g19430 Coffea canephora HOM05D003326 ORTHO05D001185 1.0e-45 188.0 191 52.9
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 3.7e-43 179.5 300 37.0
Cc04_g10970 Coffea canephora HOM05D003376 ORTHO05D001185 2.8e-38 163.3 221 44.3
Cc00_g25940 Coffea canephora HOM05D003326 ORTHO05D001185 2.4e-26 123.6 59 91.5
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 4.5e-12 76.3 265 27.5
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 7.6e-12 75.5 254 28.7
BcaC02g12005 Brassica carinata HOM05D003376 ORTHO05D001185 1.7e-11 74.3 239 28.5
C03p85050 Brassica napus HOM05D003376 ORTHO05D001185 4.9e-11 72.8 238 29.0
Cc00_g23170 Coffea canephora HOM05D003376 ORTHO05D011089 6.4e-11 72.4 130 36.2
BcaB05g22757 Brassica carinata HOM05D003376 ORTHO05D001185 8.4e-11 72.0 234 28.6
BraA06t26274Z Brassica rapa HOM05D003376 ORTHO05D001185 1.1e-10 71.6 236 29.2
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 1.1e-10 71.6 193 31.1
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 1.9e-10 70.9 235 26.8
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 5.4e-10 69.3 218 29.8
C05p40810 Brassica napus HOM05D003376 ORTHO05D001185 5.4e-10 69.3 245 30.6
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.4e-10 69.3 280 25.7
Cc00_g25700 Coffea canephora HOM05D003326 ORTHO05D001185 7.1e-10 68.9 56 57.1
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.1e-10 68.9 268 26.5
Atru.chr9.333 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-09 68.2 244 27.5
ECA248G2717 Erigeron canadensis HOM05D003326 ORTHO05D001185 1.8e-08 64.3 233 27.0
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 1.8e-08 64.3 252 26.2
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.3e-08 63.9 268 25.7
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.9e-08 63.2 278 25.2
C07p11790 Brassica napus HOM05D003376 ORTHO05D001185 5.1e-08 62.8 177 31.6
HanXRQChr09g0262501 Helianthus annuus HOM05D003376 ORTHO05D001185 5.1e-08 62.8 257 26.8
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 5.1e-08 62.8 257 26.8
A01p23920 Brassica napus HOM05D003376 ORTHO05D001185 6.7e-08 62.4 158 32.9
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.7e-08 62.4 258 25.6
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 1.5e-07 61.2 257 26.5
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 1.9e-07 60.8 257 26.5
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 4.3e-07 59.7 252 28.6
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 5.6e-07 59.3 209 30.1
BcaB07g32859 Brassica carinata HOM05D003376 ORTHO05D001185 9.6e-07 58.5 145 33.1
BcaB01g00422 Brassica carinata HOM05D003376 ORTHO05D001185 1.6e-06 57.8 146 32.9
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 2.1e-06 57.4 183 30.1
BolC4t22489H Brassica oleracea HOM05D003376 ORTHO05D001185 2.8e-06 57.0 156 31.4
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.8e-06 57.0 206 28.2
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.8e-06 57.0 164 27.4
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.7e-06 56.6 208 26.9
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 6.2e-06 55.8 136 32.4
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 6.2e-06 55.8 226 30.1


User provided reference genes

Program Settings