Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g32900 Coffea canephora HOM05D018220 ORTHO05D025129 3.8e-55 219.5 185 100.0
Cc09_g06840 Coffea canephora HOM05D018220 ORTHO05D025129 2.0e-24 117.5 183 63.9
Cc09_g06880 Coffea canephora HOM05D018220 ORTHO05D153793 4.7e-21 106.3 184 76.1
Cc00_g26830 Coffea canephora HOM05D000021 ORTHO05D000010 1.3e-18 98.2 121 57.9
Cc09_g06870 Coffea canephora HOM05D000021 ORTHO05D000010 6.5e-15 85.9 205 42.0
Cc09_g06860 Coffea canephora HOM05D018220 ORTHO05D015223 1.5e-11 74.7 71 56.3
Cc00_g30990 Coffea canephora HOM05D018220 ORTHO05D154426 4.8e-10 69.7 75 86.7
CAN.G189.3 Capsicum annuum HOM05D000021 ORTHO05D000010 2.0e-08 64.3 202 41.6
Cc02_g15280 Coffea canephora HOM05D000021 ORTHO05D000010 2.0e-08 64.3 197 50.3
Cc09_g06850 Coffea canephora HOM05D000021 ORTHO05D152980 2.0e-08 64.3 62 56.5
Dinv03885 Davidia involucrata HOM05D000021 ORTHO05D000010 2.0e-08 64.3 54 59.3
Actinidia24294 Actinidia chinensis HOM05D000021 ORTHO05D000010 4.5e-08 63.2 54 63.0
CiPaw.10G100500 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.3e-07 61.6 64 53.1
PGSC0003DMG400010400 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.3e-07 61.6 54 53.7
CSS0000258 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.7e-07 61.2 56 55.4
CSS0014128 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.7e-07 61.2 56 50.0
CSS0046746 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.7e-07 61.2 57 50.9
Hma1.2p1_0472F.1_g159600 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 1.7e-07 61.2 57 50.9
Migut.M01018 Erythranthe guttata HOM05D000021 ORTHO05D000010 2.2e-07 60.8 53 52.8
Ciclev10006830m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.0e-07 59.7 56 51.8
CiPaw.10G101200 Carya illinoinensis HOM05D000021 ORTHO05D000010 6.5e-07 59.3 64 51.6
Cc08_g13330 Coffea canephora HOM05D000021 ORTHO05D000010 6.5e-07 59.3 53 56.6
Cc09_g06900 Coffea canephora HOM05D000021 ORTHO05D000010 8.5e-07 58.9 71 84.5
Ciclev10004247m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.1e-06 58.5 57 54.4
Ciclev10007091m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.1e-06 58.5 56 50.0
Cc05_g00270 Coffea canephora HOM05D000021 ORTHO05D000010 1.1e-06 58.5 53 52.8
Cc11_g07840 Coffea canephora HOM05D000021 ORTHO05D000010 1.1e-06 58.5 56 53.6
CSS0028052 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.5e-06 58.2 54 51.9
CiPaw.10G099300 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.5e-06 58.2 53 54.7
Cc00_g28060 Coffea canephora HOM05D000021 ORTHO05D000010 1.5e-06 58.2 56 53.6
Hma1.2p1_0953F.1_g241100 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 1.5e-06 58.2 56 51.8
CAN.G824.12 Capsicum annuum HOM05D000021 ORTHO05D000010 1.9e-06 57.8 144 34.7
Cc05_g00250 Coffea canephora HOM05D000021 ORTHO05D000010 1.9e-06 57.8 47 59.6
Hma1.2p1_0178F.1_g078640 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 1.9e-06 57.8 53 47.2
Oeu030769.2 Olea europaea HOM05D000021 ORTHO05D000010 1.9e-06 57.8 57 52.6
Solyc02g072440.4 Solanum lycopersicum HOM05D000021 ORTHO05D000010 1.9e-06 57.8 56 58.9
Sopen02g021410 Solanum pennellii HOM05D000021 ORTHO05D000010 1.9e-06 57.8 56 58.9
vmacro03409 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.9e-06 57.8 53 56.6
CAN.G783.13 Capsicum annuum HOM05D000002 ORTHO05D000010 2.5e-06 57.4 200 39.5
Cc09_g05470 Coffea canephora HOM05D000021 ORTHO05D000010 2.5e-06 57.4 53 52.8
Cc02_g15290 Coffea canephora HOM05D000021 ORTHO05D000010 3.2e-06 57.0 50 56.0
Cc02_g15310 Coffea canephora HOM05D000021 ORTHO05D000010 3.2e-06 57.0 50 56.0
Cc08_g10270 Coffea canephora HOM05D000021 ORTHO05D000010 3.2e-06 57.0 53 50.9
MD05G1297700 Malus domestica HOM05D000021 ORTHO05D000010 3.2e-06 57.0 49 57.1
Nitab4.5_0005171g0080 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.2e-06 57.0 57 49.1
Ciclev10007062m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.2e-06 56.6 56 53.6
Cc09_g05450 Coffea canephora HOM05D000021 ORTHO05D000010 4.2e-06 56.6 57 50.9
arahy.Tifrunner.gnm1.ann1.0A7DRV Arachis hypogaea HOM05D000021 ORTHO05D000010 5.5e-06 56.2 55 49.1
CAN.G404.23 Capsicum annuum HOM05D000021 ORTHO05D000010 5.5e-06 56.2 144 43.8
Ciclev10004386m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.5e-06 56.2 57 52.6
Hma1.2p1_0178F.1_g078650 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 5.5e-06 56.2 55 50.9
Nitab4.5_0004398g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.5e-06 56.2 54 51.9
RcHm_v2.0_Chr5g0016021 Rosa chinensis HOM05D000021 ORTHO05D000010 5.5e-06 56.2 54 53.7
Duzib106G1694 Durio zibethinus HOM05D000021 ORTHO05D000010 7.2e-06 55.8 54 53.7
Ciclev10018643m.g Citrus clementina HOM05D000021 ORTHO05D000010 9.5e-06 55.5 54 50.0
Cc04_g14420 Coffea canephora HOM05D000021 ORTHO05D000010 9.5e-06 55.5 174 54.0
Cc09_g05650 Coffea canephora HOM05D000021 ORTHO05D000010 9.5e-06 55.5 54 50.0
Prupe.4G130200 Prunus persica HOM05D000021 ORTHO05D000010 9.5e-06 55.5 48 58.3
Sopen02g021440 Solanum pennellii HOM05D000021 ORTHO05D000010 9.5e-06 55.5 57 47.4
GSVIVG01016080001 Vitis vinifera HOM05D000021 ORTHO05D000010 9.5e-06 55.5 53 54.7


User provided reference genes

Program Settings