Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 7.1e-147 523.9 255 100.0
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 4.7e-58 228.8 208 59.6
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 1.9e-35 153.7 106 74.5
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.5e-29 132.9 138 47.1
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 1.0e-28 131.3 122 51.6
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.0e-28 131.3 150 48.0
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.7e-28 130.6 138 46.4
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.7e-28 130.6 138 46.4
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.3e-28 130.2 148 46.6
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 6.6e-28 128.6 173 43.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 8.7e-28 128.3 146 45.9
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.5e-27 127.5 117 52.1
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.9e-27 127.1 148 45.3
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.9e-27 127.1 118 54.2
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 2.5e-27 126.7 139 47.5
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.5e-27 126.7 127 49.6
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 3.3e-27 126.3 137 47.4
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 4.3e-27 125.9 133 46.6
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 4.3e-27 125.9 181 39.2
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 5.6e-27 125.6 146 45.9
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 5.6e-27 125.6 146 45.9
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.3e-27 125.2 146 45.9
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 7.3e-27 125.2 141 45.4
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 9.6e-27 124.8 145 45.5
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 9.6e-27 124.8 137 46.7
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.3e-26 124.4 117 51.3
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.3e-26 124.4 117 51.3
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.3e-26 124.4 144 44.4
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-26 124.0 117 50.4
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.1e-26 123.6 117 52.1
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 2.1e-26 123.6 146 44.5
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 2.1e-26 123.6 132 49.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 2.8e-26 123.2 139 45.3
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 3.6e-26 122.9 169 42.6
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.6e-26 122.9 177 37.9
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.6e-26 122.9 177 37.9
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 3.6e-26 122.9 143 43.4
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 6.2e-26 122.1 117 51.3
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 6.2e-26 122.1 147 45.6
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 8.1e-26 121.7 133 46.6
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 8.1e-26 121.7 147 42.2
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 8.1e-26 121.7 131 47.3
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 1.1e-25 121.3 141 44.7
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.1e-25 121.3 152 41.4
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.1e-25 121.3 117 50.4
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.4e-25 120.9 119 51.3
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.4e-25 120.9 167 38.3
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.4e-25 120.9 125 48.0
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.8e-25 120.6 128 46.9
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 2.4e-25 120.2 141 45.4
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 2.4e-25 120.2 158 42.4
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 2.4e-25 120.2 141 45.4
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 2.4e-25 120.2 141 45.4
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.4e-25 120.2 119 49.6
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 2.4e-25 120.2 124 49.2
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 2.4e-25 120.2 136 45.6
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.4e-25 120.2 117 48.7
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 3.1e-25 119.8 120 49.2
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.1e-25 119.8 117 51.3
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.1e-25 119.8 117 48.7
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 3.1e-25 119.8 119 50.4
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 4.0e-25 119.4 122 47.5
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 4.0e-25 119.4 121 49.6
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 5.3e-25 119.0 169 39.6
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.3e-25 119.0 117 47.9
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 5.3e-25 119.0 117 50.4
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 5.3e-25 119.0 121 48.8
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 6.9e-25 118.6 119 48.7
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 6.9e-25 118.6 119 48.7
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.9e-25 118.6 117 48.7
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.0e-25 118.2 119 48.7
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 9.0e-25 118.2 136 44.9
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.2e-24 117.9 117 47.9
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.2e-24 117.9 117 50.4
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.5e-24 117.5 118 47.5
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.5e-24 117.5 140 45.0
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.5e-24 117.5 127 46.5
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.5e-24 117.5 157 42.0
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.5e-24 117.5 117 50.4
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.0e-24 117.1 133 44.4
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 2.0e-24 117.1 117 48.7
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.0e-24 117.1 127 46.5
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 2.0e-24 117.1 131 45.8
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.6e-24 116.7 117 47.0
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.6e-24 116.7 117 47.9
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.6e-24 116.7 117 52.1
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.4e-24 116.3 117 47.0
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.4e-24 116.3 117 47.0
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.4e-24 116.3 117 47.0
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 4.5e-24 115.9 147 42.9
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 4.5e-24 115.9 117 47.9
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 4.5e-24 115.9 117 47.9
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 4.5e-24 115.9 117 47.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.5e-24 115.9 117 49.6
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 4.5e-24 115.9 139 43.9
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 5.8e-24 115.5 129 45.7
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 5.8e-24 115.5 127 46.5
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 7.6e-24 115.2 129 45.0
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 7.6e-24 115.2 117 48.7
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 7.6e-24 115.2 117 48.7
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 7.6e-24 115.2 117 47.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 7.6e-24 115.2 120 45.8
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 7.6e-24 115.2 115 47.8
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 9.9e-24 114.8 117 47.0
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 9.9e-24 114.8 117 47.9
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 9.9e-24 114.8 117 50.4
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 2.2e-23 113.6 121 48.8
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.9e-23 113.2 139 41.7
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.9e-23 113.2 117 47.9
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.9e-23 113.2 117 47.0
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-22 110.5 121 46.3
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.6e-21 107.5 133 42.9
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 2.1e-21 107.1 127 45.7
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.9e-21 105.1 114 47.4
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 1.0e-20 104.8 137 41.6
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 3.0e-20 103.2 114 48.2
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 5.1e-20 102.4 109 47.7
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 5.1e-20 102.4 142 39.4
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 6.7e-20 102.1 122 44.3
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 6.7e-20 102.1 122 42.6
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.9e-19 100.5 122 41.8
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.4e-19 98.6 122 41.8
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.6e-18 97.4 100 44.0
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 2.8e-18 96.7 142 33.1
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.7e-18 96.3 100 44.0
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 6.2e-18 95.5 185 35.1
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 8.1e-18 95.1 98 44.9
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.4e-17 94.4 133 41.4
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.4e-17 94.4 122 41.8
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.8e-17 94.0 122 40.2
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 5.3e-17 92.4 183 33.9
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 2.0e-16 90.5 140 37.1
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.8e-16 89.0 149 36.2
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 7.6e-16 88.6 83 47.0
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-14 84.7 122 42.6
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 4.2e-14 82.8 101 42.6
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.8e-12 77.4 85 49.4
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.6e-10 70.9 151 35.8
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.1e-10 70.5 78 50.0
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 6.3e-10 68.9 83 45.8
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 8.2e-10 68.6 59 52.5
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 5.8e-08 62.4 118 37.3
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.3e-07 61.2 68 50.0
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.3e-07 61.2 68 50.0
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 2.2e-07 60.5 83 44.6
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.2e-07 60.5 63 44.4
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 2.9e-07 60.1 47 53.2
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 3.8e-07 59.7 122 32.8
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.9e-06 57.4 71 46.5
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 3.2e-06 56.6 45 51.1
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.2e-06 56.6 62 43.5
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 4.2e-06 56.2 34 61.8


User provided reference genes

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