Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 5.7e-46 187.2 92 100.0
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 9.1e-44 179.9 89 97.8
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 1.2e-43 179.5 89 97.8
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 3.4e-43 177.9 89 97.8
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 4.5e-43 177.6 89 96.6
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 2.7e-32 141.7 92 76.1
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 3.6e-32 141.4 87 79.3
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 4.7e-32 141.0 92 75.0
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 4.7e-32 141.0 92 75.0
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 2.3e-31 138.7 92 73.9
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 3.0e-31 138.3 67 95.5
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 2.0e-30 135.6 87 80.5
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 2.6e-30 135.2 85 78.8
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.2e-29 132.1 93 72.0
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.2e-29 132.1 93 72.0
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.2e-29 132.1 93 72.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 3.7e-29 131.3 88 72.7
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 3.7e-29 131.3 75 82.7
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 6.3e-29 130.6 84 77.4
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 1.8e-28 129.0 80 77.5
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 3.1e-28 128.3 88 71.6
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 3.1e-28 128.3 81 75.3
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 4.1e-28 127.9 90 71.1
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 5.3e-28 127.5 84 76.2
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 2.0e-27 125.6 83 74.7
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 2.0e-27 125.6 81 77.8
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 2.7e-27 125.2 88 71.6
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 4.5e-27 124.4 86 70.9
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 4.5e-27 124.4 89 70.8
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 7.7e-27 123.6 89 71.9
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 1.0e-26 123.2 89 71.9
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 1.0e-26 123.2 88 73.9
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 1.3e-26 122.9 86 74.4
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 1.7e-26 122.5 87 70.1
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.7e-26 122.5 89 70.8
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 2.2e-26 122.1 92 67.4
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 2.2e-26 122.1 99 63.6
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 2.2e-26 122.1 89 70.8
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 2.9e-26 121.7 88 71.6
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.9e-26 121.7 89 71.9
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 3.8e-26 121.3 86 67.4
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 5.0e-26 120.9 83 72.3
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 5.0e-26 120.9 87 69.0
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 6.5e-26 120.6 92 69.6
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 6.5e-26 120.6 89 69.7
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 6.5e-26 120.6 89 69.7
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 6.5e-26 120.6 89 69.7
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 6.5e-26 120.6 88 69.3
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 8.5e-26 120.2 74 78.4
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 8.5e-26 120.2 88 68.2
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 8.5e-26 120.2 71 83.1
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.9e-25 119.0 86 70.9
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 1.9e-25 119.0 87 69.0
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 2.5e-25 118.6 88 68.2
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 3.2e-25 118.2 73 79.5
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 3.2e-25 118.2 88 65.9
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 5.5e-25 117.5 73 72.6
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 7.2e-25 117.1 89 67.4
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 7.2e-25 117.1 72 80.6
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.2e-25 117.1 89 69.7
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 7.2e-25 117.1 81 72.8
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 7.2e-25 117.1 88 69.3
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.2e-24 116.3 89 68.5
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.6e-24 115.9 88 67.0
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 1.6e-24 115.9 91 65.9
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 2.1e-24 115.5 88 64.8
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 2.7e-24 115.2 59 89.8
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 2.7e-24 115.2 88 65.9
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 3.6e-24 114.8 89 66.3
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 4.7e-24 114.4 88 65.9
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 4.7e-24 114.4 88 65.9
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 4.7e-24 114.4 80 70.0
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 4.7e-24 114.4 72 73.6
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 4.7e-24 114.4 89 64.0
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 6.1e-24 114.0 71 76.1
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 8.0e-24 113.6 76 72.4
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 1.0e-23 113.2 88 63.6
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 1.4e-23 112.8 89 65.2
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 1.8e-23 112.5 72 73.6
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 1.8e-23 112.5 72 73.6
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 2.3e-23 112.1 91 65.9
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 2.3e-23 112.1 87 64.4
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 3.0e-23 111.7 89 64.0
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 3.0e-23 111.7 89 64.0
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 3.0e-23 111.7 89 62.9
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 3.0e-23 111.7 88 64.8
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 3.0e-23 111.7 87 63.2
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 3.0e-23 111.7 88 64.8
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 3.0e-23 111.7 87 63.2
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 3.0e-23 111.7 89 64.0
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 3.0e-23 111.7 92 60.9
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 3.0e-23 111.7 93 63.4
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 4.0e-23 111.3 87 64.4
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 6.8e-23 110.5 88 63.6
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 6.8e-23 110.5 91 60.4
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 8.8e-23 110.2 87 63.2
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.2e-22 109.8 91 60.4
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 1.2e-22 109.8 76 68.4
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 1.2e-22 109.8 88 61.4
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 1.5e-22 109.4 94 62.8
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.5e-22 109.4 76 68.4
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 2.0e-22 109.0 85 67.1
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 2.0e-22 109.0 85 67.1
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 2.0e-22 109.0 69 73.9
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 2.6e-22 108.6 84 64.3
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 2.6e-22 108.6 65 80.0
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 2.6e-22 108.6 75 77.3
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 3.4e-22 108.2 68 72.1
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 3.4e-22 108.2 97 60.8
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.3e-21 106.3 88 65.9
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 1.3e-21 106.3 71 73.2
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 2.2e-21 105.5 77 70.1
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 2.4e-20 102.1 90 56.7
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 1.2e-19 99.8 64 73.4
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 4.5e-19 97.8 61 72.1
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 8.5e-18 93.6 68 67.6
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 1.2e-16 89.7 92 45.7
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 2.1e-16 89.0 80 52.5
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 4.7e-16 87.8 55 76.4
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 6.1e-16 87.4 82 56.1
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 4.0e-15 84.7 67 58.2
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 8.8e-15 83.6 52 71.2
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 8.8e-15 83.6 71 56.3
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.2e-14 83.2 71 54.9
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 5.7e-14 80.9 89 49.4
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 2.4e-12 75.5 53 67.9
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 1.2e-11 73.2 32 96.9
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.2e-11 73.2 82 51.2


User provided reference genes

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