Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.5e-59 232.6 120 100.0
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 5.0e-42 174.5 87 100.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.6e-35 152.1 132 68.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 3.8e-26 121.7 132 56.8
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-25 120.2 134 54.5
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.9e-25 119.4 131 54.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.6e-24 116.3 158 45.6
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 4.7e-24 114.8 131 51.9
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.1e-24 114.4 127 53.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 8.0e-24 114.0 131 52.7
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 8.0e-24 114.0 131 54.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.0e-23 113.6 140 50.0
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.4e-23 113.2 100 66.0
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.4e-23 113.2 131 50.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.4e-23 113.2 127 52.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.3e-23 112.5 131 51.1
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.3e-23 112.5 134 52.2
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 4.0e-23 111.7 131 50.4
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.0e-23 111.7 131 51.1
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 5.2e-23 111.3 131 49.6
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 6.7e-23 110.9 131 50.4
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.8e-23 110.5 136 50.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.2e-22 110.2 124 53.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.3e-22 108.6 132 50.8
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.3e-22 108.6 126 52.4
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 5.7e-22 107.8 131 49.6
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 5.7e-22 107.8 123 51.2
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 7.5e-22 107.5 131 49.6
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-21 106.3 132 50.0
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.7e-21 106.3 131 48.9
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.2e-21 105.9 133 49.6
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 2.8e-21 105.5 133 47.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 6.3e-21 104.4 131 47.3
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 6.3e-21 104.4 128 47.7
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 6.3e-21 104.4 123 49.6
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.1e-20 103.6 132 49.2
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-20 103.6 132 49.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.1e-20 103.6 134 49.3
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-20 103.2 132 49.2
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.4e-20 103.2 123 49.6
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.4e-20 103.2 123 48.8
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.4e-20 103.2 123 49.6
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.4e-20 103.2 123 49.6
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.4e-20 103.2 131 46.6
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 3.1e-20 102.1 128 50.0
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.1e-20 102.1 131 48.9
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 4.1e-20 101.7 134 47.0
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.1e-20 101.7 131 45.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 4.1e-20 101.7 135 51.1
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.3e-20 101.3 127 48.0
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.3e-20 101.3 123 48.8
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 9.1e-20 100.5 123 49.6
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 9.1e-20 100.5 131 44.3
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.2e-19 100.1 128 49.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.2e-19 100.1 135 47.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.2e-19 100.1 126 48.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.0e-19 99.4 127 46.5
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.7e-19 99.0 115 53.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 3.5e-19 98.6 122 48.4
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 4.5e-19 98.2 126 46.8
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 4.5e-19 98.2 123 46.3
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 5.9e-19 97.8 128 48.4
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 7.7e-19 97.4 143 47.6
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 7.7e-19 97.4 123 48.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-18 96.7 123 47.2
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.7e-18 96.3 125 47.2
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-18 96.3 120 46.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.9e-18 95.5 107 57.9
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.9e-18 95.5 123 45.5
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 6.5e-18 94.4 122 47.5
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-17 93.6 124 45.2
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.9e-17 92.8 131 43.5
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.2e-17 92.0 126 48.4
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 4.2e-17 91.7 131 42.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.2e-17 90.9 127 44.1
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 7.2e-17 90.9 112 49.1
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.2e-17 90.9 127 44.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 2.7e-16 89.0 127 42.5
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.6e-16 88.6 127 44.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 6.1e-16 87.8 123 41.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 6.1e-16 87.8 131 42.0
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.4e-15 86.7 131 42.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.0e-15 85.5 127 42.5
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.2e-14 83.6 127 43.3
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-14 83.6 123 41.5
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.7e-14 81.3 123 39.8
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.3e-13 80.1 123 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.8e-13 78.2 123 39.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.8e-13 78.2 123 39.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.1e-12 77.0 132 38.6
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.1e-12 77.0 129 41.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.4e-12 76.6 125 40.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 9.1e-12 73.9 69 58.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.7e-11 72.4 71 57.7
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.7e-11 72.4 71 56.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.5e-11 72.0 71 56.3
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.5e-11 71.6 129 36.4
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.3e-10 70.1 68 58.8
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.9e-10 68.9 71 53.5
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.9e-10 68.9 124 37.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 3.8e-10 68.6 71 53.5
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 8.6e-10 67.4 124 36.3
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 8.6e-10 67.4 72 54.2
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.1e-09 67.0 124 37.1
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.5e-09 66.6 124 36.3
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.5e-09 65.9 124 38.7
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.3e-09 65.5 123 37.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.3e-09 65.5 122 37.7
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 9.5e-09 63.9 124 36.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-08 63.2 122 36.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.6e-08 63.2 132 34.8
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 6.1e-08 61.2 127 33.9
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 6.1e-08 61.2 127 33.9
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.0e-07 60.5 125 36.8
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.8e-07 59.7 124 36.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.3e-07 59.3 123 36.6
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 4.0e-07 58.5 125 36.0
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 6.8e-07 57.8 125 36.0
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 6.8e-07 57.8 126 33.3
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 5.7e-06 54.7 129 33.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 5.7e-06 54.7 122 32.8
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 5.7e-06 54.7 37 64.9


User provided reference genes

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