Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g31600 Coffea canephora HOM05D002221 ORTHO05D020485 1.2e-49 199.5 97 100.0
Cc00_g23600 Coffea canephora HOM05D000001 ORTHO05D020485 5.0e-08 61.2 33 87.9
Cc05_g00890 Coffea canephora HOM05D002221 ORTHO05D010139 1.9e-07 59.3 33 84.8
Rhsim13G0143800 Rhododendron simsii HOM05D002221 ORTHO05D010139 2.5e-07 58.9 45 64.4
vmacro03629 Vaccinium macrocarpon HOM05D002221 ORTHO05D010139 2.5e-07 58.9 45 64.4
Cc00_g16890 Coffea canephora HOM05D002221 ORTHO05D020485 3.2e-07 58.5 30 90.0
CSS0005625 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010139 5.5e-07 57.8 45 62.2
CSS0021685 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010139 5.5e-07 57.8 45 62.2
Actinidia26846 Actinidia chinensis HOM05D002221 ORTHO05D002626 1.2e-06 56.6 39 69.2
Nitab4.5_0000143g0060 Nicotiana tabacum HOM05D002221 ORTHO05D010139 1.2e-06 56.6 71 47.9
HanXRQChr08g0207961 Helianthus annuus HOM05D002221 ORTHO05D002626 1.6e-06 56.2 39 69.2
Sed0012115 Sechium edule HOM05D002221 ORTHO05D002626 1.6e-06 56.2 45 55.6
Actinidia02303 Actinidia chinensis HOM05D002221 ORTHO05D002626 2.1e-06 55.8 39 69.2
Sed0016031 Sechium edule HOM05D002221 ORTHO05D002626 2.1e-06 55.8 39 66.7
Actinidia09774 Actinidia chinensis HOM05D002221 ORTHO05D002626 2.7e-06 55.5 54 51.9
DCAR_021108 Daucus carota HOM05D002221 ORTHO05D002626 2.7e-06 55.5 44 59.1
Lsat_1_v5_gn_0_32461 Lactuca sativa HOM05D002221 ORTHO05D009499 2.7e-06 55.5 39 69.2
Manes.01G168200 Manihot esculenta HOM05D002221 ORTHO05D002626 2.7e-06 55.5 43 62.8
Nitab4.5_0002499g0120 Nicotiana tabacum HOM05D002221 ORTHO05D010139 2.7e-06 55.5 71 47.9
CiPaw.09G104400 Carya illinoinensis HOM05D002221 ORTHO05D002626 3.6e-06 55.1 42 64.3
Duzib235G0446 Durio zibethinus HOM05D002221 ORTHO05D010139 3.6e-06 55.1 51 54.9
Manes.02G127500 Manihot esculenta HOM05D000001 ORTHO05D010139 3.6e-06 55.1 45 55.6
TWI63G1235 Tripterygium wilfordii HOM05D002221 ORTHO05D002626 3.6e-06 55.1 42 61.9
MSTRG.7153 Avicennia marina HOM05D002221 ORTHO05D002626 4.6e-06 54.7 39 64.1
PGR004G0853 Punica granatum HOM05D002221 ORTHO05D002626 4.6e-06 54.7 42 64.3
PGR042G3580 Punica granatum HOM05D002221 ORTHO05D002626 4.6e-06 54.7 44 61.4
TWI38G1144 Tripterygium wilfordii HOM05D002221 ORTHO05D002626 4.6e-06 54.7 42 64.3
TAR629G1692 Trochodendron aralioides HOM05D002221 ORTHO05D002626 4.6e-06 54.7 43 58.1
CANSAT64G0524 Cannabis sativa HOM05D002221 ORTHO05D002626 6.1e-06 54.3 62 43.5
Cfa000080 Carpinus fangiana HOM05D002221 ORTHO05D010139 6.1e-06 54.3 67 49.3
QL09p043118 Quercus lobata HOM05D000001 ORTHO05D010139 6.1e-06 54.3 30 80.0
PGSC0003DMG400013288 Solanum tuberosum HOM05D002221 ORTHO05D010139 6.1e-06 54.3 44 59.1
Thecc.06G235900 Theobroma cacao HOM05D002221 ORTHO05D002626 6.1e-06 54.3 39 64.1
TAR626G0475 Trochodendron aralioides HOM05D002221 ORTHO05D002626 6.1e-06 54.3 43 60.5
Dinv07854 Davidia involucrata HOM05D002221 ORTHO05D002626 7.9e-06 53.9 44 59.1
Dinv32069 Davidia involucrata HOM05D000001 ORTHO05D010139 7.9e-06 53.9 30 80.0


User provided reference genes

Program Settings