Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g31070 Coffea canephora HOM05D005124 ORTHO05D005914 8.2e-25 116.3 61 100.0
Cc02_g07900 Coffea canephora HOM05D005124 ORTHO05D005914 3.6e-12 74.3 38 97.4
vmacro07168 Vaccinium macrocarpon HOM05D005124 ORTHO05D005914 8.8e-11 69.7 38 89.5
Actinidia02951 Actinidia chinensis HOM05D005124 ORTHO05D005914 2.6e-10 68.2 38 84.2
Ciclev10032183m.g Citrus clementina HOM05D005124 ORTHO05D005914 2.6e-10 68.2 40 77.5
Glyma.02G273300 Glycine max HOM05D005124 ORTHO05D005914 2.6e-10 68.2 48 68.8
TWI63G0876 Tripterygium wilfordii HOM05D005124 ORTHO05D005914 2.6e-10 68.2 38 84.2
GSVIVG01016549001 Vitis vinifera HOM05D005124 ORTHO05D005914 2.6e-10 68.2 38 84.2
MSTRG.8244 Avicennia marina HOM05D005124 ORTHO05D005914 3.3e-10 67.8 38 84.2
FvH4_7g22400 Fragaria vesca HOM05D005124 ORTHO05D005914 3.3e-10 67.8 38 89.5
RcHm_v2.0_Chr1g0367031 Rosa chinensis HOM05D005124 ORTHO05D005914 3.3e-10 67.8 38 89.5
Glyma.14G043500 Glycine max HOM05D005124 ORTHO05D005914 4.4e-10 67.4 48 66.7
Potri.008G055400 Populus trichocarpa HOM05D005124 ORTHO05D005914 4.4e-10 67.4 38 84.2
Potri.010G204400 Populus trichocarpa HOM05D005124 ORTHO05D005914 4.4e-10 67.4 38 84.2
SGA_v2.0_scaffold62G21508 Striga asiatica HOM05D005124 ORTHO05D005914 4.4e-10 67.4 38 84.2
TPR.G11759 Trifolium pratense HOM05D005124 ORTHO05D005914 4.4e-10 67.4 48 68.8
Actinidia07729 Actinidia chinensis HOM05D005124 ORTHO05D005914 5.7e-10 67.0 39 79.5
MD07G1197900 Malus domestica HOM05D005124 ORTHO05D005914 7.4e-10 66.6 38 84.2
Medtr5g087590 Medicago truncatula HOM05D005124 ORTHO05D005914 7.4e-10 66.6 48 66.7
CSS0018512 Camellia sinensis var. sinensis HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 81.6
Cpa.g.c31433 Carica papaya HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 81.6
Gohir.A10G218500 Gossypium hirsutum HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 81.6
Gohir.D10G228100 Gossypium hirsutum HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 81.6
Gorai.011G260500 Gossypium raimondii HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 81.6
Peaxi162Scf00015g01122 Petunia axillaris HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 81.6
Prupe.2G234700 Prunus persica HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 84.2
TWI38G0280 Tripterygium wilfordii HOM05D005124 ORTHO05D005914 9.7e-10 66.2 38 81.6
Sopen05g032970 Solanum pennellii HOM05D005124 ORTHO05D005914 1.3e-09 65.9 38 81.6
PGSC0003DMG400023428 Solanum tuberosum HOM05D005124 ORTHO05D005914 1.3e-09 65.9 38 81.6
Thecc.10G042800 Theobroma cacao HOM05D005124 ORTHO05D005914 1.3e-09 65.9 38 81.6
TPR.G11707 Trifolium pratense HOM05D005124 ORTHO05D005914 1.3e-09 65.9 48 66.7
EL10Ac2g04754 Beta vulgaris HOM05D005124 ORTHO05D005914 1.7e-09 65.5 38 81.6
Haze_17065 Corylus avellana HOM05D005124 ORTHO05D005914 1.7e-09 65.5 38 81.6
LjContig00564g0003972 Lotus japonicus HOM05D005124 ORTHO05D005914 1.7e-09 65.5 48 66.7
Phvul.008G208700 Phaseolus vulgaris HOM05D005124 ORTHO05D005914 1.7e-09 65.5 48 66.7
PGR142G4329 Punica granatum HOM05D005124 ORTHO05D005914 1.7e-09 65.5 38 81.6
Atru.chr12.456 Acer truncatum HOM05D005124 ORTHO05D005914 2.2e-09 65.1 38 78.9
Atru.chr12.478 Acer truncatum HOM05D005124 ORTHO05D005914 2.2e-09 65.1 38 78.9
CAN.G1013.24 Capsicum annuum HOM05D005124 ORTHO05D005914 2.2e-09 65.1 38 81.6
COL.COLO4_15035 Corchorus olitorius HOM05D005124 ORTHO05D005914 2.2e-09 65.1 38 78.9
Manes.07G115800 Manihot esculenta HOM05D005124 ORTHO05D005914 2.2e-09 65.1 38 78.9
Sabra08G0040000 Salix brachista HOM05D005124 ORTHO05D005914 2.2e-09 65.1 40 77.5
CiPaw.01G287000 Carya illinoinensis HOM05D005124 ORTHO05D005914 2.8e-09 64.7 38 78.9
PGR044G0197 Punica granatum HOM05D005124 ORTHO05D005914 2.8e-09 64.7 38 78.9
QL07p048136 Quercus lobata HOM05D005124 ORTHO05D005914 2.8e-09 64.7 37 81.1
Rhsim09G0165600 Rhododendron simsii HOM05D005124 ORTHO05D005914 2.8e-09 64.7 38 78.9
VMungo0647G2337 Vigna mungo HOM05D005124 ORTHO05D005914 2.8e-09 64.7 48 66.7
CiPaw.02G183600 Carya illinoinensis HOM05D005124 ORTHO05D005914 3.7e-09 64.3 38 76.3
AUR62014578 Chenopodium quinoa HOM05D005124 ORTHO05D005914 3.7e-09 64.3 38 78.9
AUR62039383 Chenopodium quinoa HOM05D005124 ORTHO05D005914 3.7e-09 64.3 38 78.9
DCAR_011693 Daucus carota HOM05D005124 ORTHO05D005914 3.7e-09 64.3 38 81.6
Hma1.2p1_0493F.1_g164810 Hydrangea macrophylla HOM05D005124 ORTHO05D005914 3.7e-09 64.3 38 81.6
Oeu064390.1 Olea europaea HOM05D005124 ORTHO05D005914 3.7e-09 64.3 38 81.6
Solyc05g054490.3 Solanum lycopersicum HOM05D005124 ORTHO05D005914 3.7e-09 64.3 38 78.9
Cfa001478 Carpinus fangiana HOM05D005124 ORTHO05D005914 4.8e-09 63.9 38 78.9
MD01G1133600 Malus domestica HOM05D005124 ORTHO05D005914 4.8e-09 63.9 38 81.6
Nitab4.5_0006489g0030 Nicotiana tabacum HOM05D005124 ORTHO05D005914 4.8e-09 63.9 38 78.9
PSO384G3927 Papaver somniferum HOM05D005124 ORTHO05D005914 4.8e-09 63.9 38 76.3
Sabra10G0158000 Salix brachista HOM05D005124 ORTHO05D005914 4.8e-09 63.9 38 78.9
Hund16091 Selenicereus undatus HOM05D005124 ORTHO05D005914 4.8e-09 63.9 38 81.6
arahy.Tifrunner.gnm1.ann1.4ZRU7U Arachis hypogaea HOM05D005124 ORTHO05D005914 6.3e-09 63.5 48 62.5
arahy.Tifrunner.gnm1.ann1.5S3M3D Arachis hypogaea HOM05D005124 ORTHO05D005914 6.3e-09 63.5 48 62.5
Nitab4.5_0001992g0020 Nicotiana tabacum HOM05D005124 ORTHO05D005914 6.3e-09 63.5 38 78.9
unitig_736.g22316 Utricularia gibba HOM05D005124 ORTHO05D005914 6.3e-09 63.5 38 76.3
vmacro10239 Vaccinium macrocarpon HOM05D005124 ORTHO05D005914 6.3e-09 63.5 38 76.3
Zm00001eb335900 Zea mays HOM05D005124 ORTHO05D005914 6.3e-09 63.5 38 81.6
Atru.chr8.1964 Acer truncatum HOM05D005124 ORTHO05D005914 8.2e-09 63.2 38 81.6
CANSAT35G1058 Cannabis sativa HOM05D005124 ORTHO05D005914 8.2e-09 63.2 38 76.3
Duzib114G0065 Durio zibethinus HOM05D005124 ORTHO05D005914 8.2e-09 63.2 38 78.9
Thhalv10010564m.g Eutrema salsugineum HOM05D005124 ORTHO05D005914 8.2e-09 63.2 38 81.6
PSO339G1516 Papaver somniferum HOM05D005124 ORTHO05D005914 8.2e-09 63.2 38 76.3
Migut.F01507 Erythranthe guttata HOM05D005124 ORTHO05D005914 1.1e-08 62.8 38 78.9
Manes.10G030900 Manihot esculenta HOM05D005124 ORTHO05D005914 1.1e-08 62.8 38 81.6
Sc10g0001530 Simmondsia chinensis HOM05D005124 ORTHO05D005914 1.1e-08 62.8 38 76.3
QL08p059856 Quercus lobata HOM05D005124 ORTHO05D005914 1.4e-08 62.4 38 76.3
THA.LOC104810019 Tarenaya hassleriana HOM05D005124 ORTHO05D005914 1.4e-08 62.4 39 82.1
MELO3C021634.2 Cucumis melo HOM05D005124 ORTHO05D005914 1.8e-08 62.0 38 76.3
CsaV3_5G026640 Cucumis sativus L. HOM05D005124 ORTHO05D005914 1.8e-08 62.0 38 76.3
Duzib106G0291 Durio zibethinus HOM05D005124 ORTHO05D005914 1.8e-08 62.0 37 81.1
HanXRQChr14g0457911 Helianthus annuus HOM05D005124 ORTHO05D005914 1.8e-08 62.0 38 81.6
PSO339G2840 Papaver somniferum HOM05D005124 ORTHO05D005914 1.8e-08 62.0 38 76.3
Sp5g07110 Schrenkiella parvula HOM05D005124 ORTHO05D005914 1.8e-08 62.0 38 78.9
Dinv35613 Davidia involucrata HOM05D005124 ORTHO05D005914 2.4e-08 61.6 36 80.6
Ca_06145_v3 Cicer arietinum L. HOM05D005124 ORTHO05D005914 3.1e-08 61.2 48 62.5
Dinv03051 Davidia involucrata HOM05D005124 ORTHO05D005914 3.1e-08 61.2 38 71.1
Gohir.A05G349500 Gossypium hirsutum HOM05D005124 ORTHO05D005914 3.1e-08 61.2 38 76.3
Gohir.D04G062800 Gossypium hirsutum HOM05D005124 ORTHO05D005914 3.1e-08 61.2 38 76.3
Gorai.012G070200 Gossypium raimondii HOM05D005124 ORTHO05D005914 3.1e-08 61.2 38 76.3
AL5G36500 Arabidopsis lyrata HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
AT3G55360 Arabidopsis thaliana HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
BcaB01g00109 Brassica carinata HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
BcaC07g39849 Brassica carinata HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
A09p48250 Brassica napus HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
C08p30520 Brassica napus HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
BolC8t50671H Brassica oleracea HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
BraA09t40278Z Brassica rapa HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
Carub.0005s2200 Capsella rubella HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
CARHR165370 Cardamine hirsuta HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
Eucgr.G02931 Eucalyptus grandis HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 73.7
HanXRQChr02g0037461 Helianthus annuus HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 78.9
HanXRQChr08g0220691 Helianthus annuus HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 73.7
Lsat_1_v5_gn_2_119361 Lactuca sativa HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 81.6
Lj1A937T93 Lonicera japonica HOM05D005124 ORTHO05D005914 4.1e-08 60.8 38 73.7
Aqoxy4G02912 Aquilegia oxysepala HOM05D005124 ORTHO05D005914 5.3e-08 60.5 38 68.4
ECA238G0837 Erigeron canadensis HOM05D005124 ORTHO05D005914 6.9e-08 60.1 38 78.9
FAN03G2181 Fragaria x ananassa HOM05D000173 ORTHO05D005914 6.9e-08 60.1 51 66.7
Sc11g0007960 Simmondsia chinensis HOM05D005124 ORTHO05D005914 6.9e-08 60.1 43 69.8
ClCG09G019780 Citrullus lanatus HOM05D005124 ORTHO05D005914 9.1e-08 59.7 38 73.7
PSO151G0123 Papaver somniferum HOM05D005124 ORTHO05D005914 9.1e-08 59.7 38 71.1
Sed0008291 Sechium edule HOM05D005124 ORTHO05D005914 9.1e-08 59.7 38 71.1
TAR636G2208 Trochodendron aralioides HOM05D005124 ORTHO05D005914 9.1e-08 59.7 38 71.1
Lalb_Chr10g0105851 Lupinus albus HOM05D005124 ORTHO05D005914 1.2e-07 59.3 48 58.3
Sed0011488 Sechium edule HOM05D005124 ORTHO05D005914 1.2e-07 59.3 38 73.7
Hund13757 Selenicereus undatus HOM05D005124 ORTHO05D005914 1.2e-07 59.3 38 76.3
FAN06G1643 Fragaria x ananassa HOM05D000173 ORTHO05D005914 2.0e-07 58.5 51 66.7
FAN06G1830 Fragaria x ananassa HOM05D000173 ORTHO05D005914 2.0e-07 58.5 51 66.7
FAN10G1013 Fragaria x ananassa HOM05D005124 ORTHO05D005914 2.0e-07 58.5 51 66.7
Ah.10g037270 Amaranthus hybridus HOM05D005124 ORTHO05D005914 2.6e-07 58.2 36 75.0
BolC6t37460H Brassica oleracea HOM05D005124 ORTHO05D005914 2.6e-07 58.2 53 58.5
MBI05_g30240_MAGBIO Magnolia biondii HOM05D005124 ORTHO05D005914 3.4e-07 57.8 37 70.3
ClCG04G008230 Citrullus lanatus HOM05D005124 ORTHO05D005914 4.5e-07 57.4 38 63.2
FAN01G2689 Fragaria x ananassa HOM05D000173 ORTHO05D005914 4.5e-07 57.4 51 64.7
FAN01G0844 Fragaria x ananassa HOM05D000173 ORTHO05D005914 1.0e-06 56.2 51 62.7
Nn2g10381 Nelumbo nucifera HOM05D005124 ORTHO05D005914 1.0e-06 56.2 38 60.5
Aa31LG10G10370 Aethionema arabicum HOM05D005124 ORTHO05D005914 1.3e-06 55.8 38 65.8
CBR_g107 Chara braunii HOM05D005124 ORTHO05D005914 1.3e-06 55.8 38 68.4
Lalb_Chr17g0347451 Lupinus albus HOM05D005124 ORTHO05D005914 1.3e-06 55.8 36 72.2
HPP92_006613 Vanilla planifolia HOM05D005124 ORTHO05D005914 2.2e-06 55.1 37 70.3
CDE09G1206 Ceratophyllum demersum HOM05D005124 ORTHO05D005914 2.9e-06 54.7 38 71.1


User provided reference genes

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