Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 2.8e-61 238.4 121 100.0
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 1.8e-23 112.8 72 79.2
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 1.1e-20 103.6 60 81.7
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 1.1e-20 103.6 74 71.6
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.4e-20 103.2 62 79.0
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 1.4e-20 103.2 88 63.6
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 2.4e-20 102.4 77 68.8
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 3.2e-20 102.1 93 58.1
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 3.2e-20 102.1 58 81.0
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 4.1e-20 101.7 87 63.2
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 5.4e-20 101.3 73 69.9
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 5.4e-20 101.3 81 63.0
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 7.0e-20 100.9 81 65.4
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 9.2e-20 100.5 82 64.6
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 1.2e-19 100.1 86 65.1
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 1.6e-19 99.8 56 82.1
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.6e-19 99.8 56 82.1
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.6e-19 99.8 56 82.1
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.6e-19 99.8 56 82.1
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 3.5e-19 98.6 54 83.3
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 4.6e-19 98.2 62 75.8
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 7.8e-19 97.4 67 71.6
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 1.0e-18 97.1 60 76.7
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.0e-18 97.1 108 50.9
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 1.0e-18 97.1 70 70.0
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 1.3e-18 96.7 81 61.7
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 1.7e-18 96.3 60 76.7
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 2.3e-18 95.9 81 69.1
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 3.9e-18 95.1 57 77.2
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 3.9e-18 95.1 64 71.9
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 3.9e-18 95.1 94 54.3
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 5.0e-18 94.7 56 80.4
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 5.0e-18 94.7 68 67.6
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 6.6e-18 94.4 66 69.7
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 6.6e-18 94.4 76 57.9
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 6.6e-18 94.4 70 65.7
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 8.6e-18 94.0 68 69.1
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 8.6e-18 94.0 68 72.1
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 8.6e-18 94.0 64 71.9
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 8.6e-18 94.0 70 65.7
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 1.1e-17 93.6 69 73.9
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 1.1e-17 93.6 77 66.2
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 1.1e-17 93.6 60 71.7
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 1.5e-17 93.2 64 70.3
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.9e-17 92.8 58 74.1
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.9e-17 92.8 86 57.0
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 1.9e-17 92.8 58 75.9
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 2.5e-17 92.4 76 63.2
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 2.5e-17 92.4 76 63.2
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 2.5e-17 92.4 71 64.8
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 2.5e-17 92.4 71 64.8
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 2.5e-17 92.4 71 64.8
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 2.5e-17 92.4 67 71.6
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 3.3e-17 92.0 73 65.8
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 4.3e-17 91.7 83 59.0
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 4.3e-17 91.7 57 73.7
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 5.6e-17 91.3 68 66.2
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 5.6e-17 91.3 77 62.3
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 7.3e-17 90.9 63 68.3
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 7.3e-17 90.9 76 61.8
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 7.3e-17 90.9 63 68.3
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 7.3e-17 90.9 79 58.2
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 9.5e-17 90.5 76 61.8
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 9.5e-17 90.5 69 63.8
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 9.5e-17 90.5 80 60.0
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 9.5e-17 90.5 81 61.7
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 9.5e-17 90.5 54 77.8
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 1.2e-16 90.1 65 67.7
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 1.2e-16 90.1 69 62.3
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 1.2e-16 90.1 89 56.2
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 1.2e-16 90.1 89 56.2
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 1.2e-16 90.1 89 56.2
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 1.2e-16 90.1 59 71.2
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 1.2e-16 90.1 59 69.5
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.6e-16 89.7 66 66.7
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 1.6e-16 89.7 73 63.0
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 2.1e-16 89.4 58 72.4
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 2.1e-16 89.4 58 72.4
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 2.1e-16 89.4 100 50.0
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 2.1e-16 89.4 76 59.2
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 2.8e-16 89.0 82 57.3
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 2.8e-16 89.0 58 69.0
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 3.6e-16 88.6 82 57.3
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 3.6e-16 88.6 65 64.6
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 4.7e-16 88.2 84 56.0
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 6.2e-16 87.8 85 56.5
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 8.1e-16 87.4 72 63.9
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 8.1e-16 87.4 82 57.3
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 1.1e-15 87.0 84 60.7
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 1.1e-15 87.0 59 66.1
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 1.8e-15 86.3 78 60.3
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 3.1e-15 85.5 73 56.2
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 3.1e-15 85.5 63 66.7
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 5.2e-15 84.7 62 66.1
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 6.8e-15 84.3 83 53.0
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 6.8e-15 84.3 76 56.6
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 8.9e-15 84.0 75 56.0
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 1.2e-14 83.6 70 62.9
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 1.1e-12 77.0 56 58.9
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 4.1e-12 75.1 54 61.1
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 3.0e-10 68.9 45 66.7
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 8.6e-10 67.4 87 39.1
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 8.6e-10 67.4 61 55.7
Cc00_g17450 Coffea canephora HOM05D042998 ORTHO05D007824 1.1e-09 67.0 50 76.0
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 1.5e-09 66.6 62 48.4
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 1.9e-09 66.2 65 47.7
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.5e-09 65.9 49 65.3
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 5.6e-09 64.7 52 59.6
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 3.6e-08 62.0 61 49.2
Cc00_g13940 Coffea canephora HOM05D042998 ORTHO05D007824 4.0e-07 58.5 50 72.0
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 2.0e-06 56.2 112 36.6


User provided reference genes

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