Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 5.0e-96 354.4 170 100.0
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 1.3e-64 250.0 131 90.1
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 4.9e-51 204.9 125 72.0
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 4.9e-51 204.9 125 74.4
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 6.4e-51 204.5 129 72.1
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 3.2e-50 202.2 129 69.0
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 7.0e-50 201.1 139 66.9
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 7.0e-50 201.1 129 69.8
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 1.2e-49 200.3 129 70.5
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 2.0e-49 199.5 125 72.0
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 2.0e-49 199.5 129 68.2
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 3.5e-49 198.7 129 69.8
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 7.8e-49 197.6 125 71.2
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.3e-48 196.8 130 68.5
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 1.3e-48 196.8 133 70.7
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 3.9e-48 195.3 125 71.2
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 3.9e-48 195.3 129 70.5
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 6.6e-48 194.5 130 66.9
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 8.6e-48 194.1 130 67.7
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 1.5e-47 193.4 125 71.2
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 3.3e-47 192.2 125 71.2
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 4.3e-47 191.8 129 68.2
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 5.6e-47 191.4 127 66.1
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 7.3e-47 191.0 129 67.4
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 7.3e-47 191.0 148 60.8
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 9.5e-47 190.7 128 69.5
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 9.5e-47 190.7 129 67.4
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 1.6e-46 189.9 129 69.0
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 2.1e-46 189.5 129 66.7
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 2.1e-46 189.5 129 66.7
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 2.1e-46 189.5 129 67.4
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 2.8e-46 189.1 125 68.0
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 2.8e-46 189.1 156 57.1
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 3.6e-46 188.7 125 68.0
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 4.7e-46 188.3 127 65.4
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 6.2e-46 188.0 124 70.2
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 8.0e-46 187.6 129 66.7
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 1.0e-45 187.2 125 68.0
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 1.0e-45 187.2 125 67.2
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 1.4e-45 186.8 125 65.6
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 1.4e-45 186.8 127 63.8
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 1.8e-45 186.4 125 66.4
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 1.8e-45 186.4 129 64.3
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 2.3e-45 186.0 125 68.8
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 2.3e-45 186.0 128 66.4
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 5.2e-45 184.9 129 63.6
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 6.8e-45 184.5 127 64.6
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 1.2e-44 183.7 129 64.3
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 1.2e-44 183.7 129 62.8
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 1.2e-44 183.7 129 65.9
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 1.2e-44 183.7 126 67.5
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.5e-44 183.3 129 65.9
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 1.5e-44 183.3 125 66.4
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 2.6e-44 182.6 129 65.9
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 2.6e-44 182.6 129 64.3
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 2.6e-44 182.6 125 64.8
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 3.4e-44 182.2 129 64.3
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 3.4e-44 182.2 128 64.1
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 4.4e-44 181.8 125 68.8
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 4.4e-44 181.8 126 66.7
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 5.8e-44 181.4 125 68.0
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 9.8e-44 180.6 128 63.3
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 9.8e-44 180.6 125 64.0
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 1.7e-43 179.9 129 64.3
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 1.7e-43 179.9 125 68.0
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 1.7e-43 179.9 125 68.0
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 2.2e-43 179.5 129 62.0
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 2.9e-43 179.1 127 64.6
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 2.9e-43 179.1 125 67.2
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.7e-43 178.7 128 61.7
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.7e-43 178.7 128 64.1
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 3.7e-43 178.7 129 63.6
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 4.9e-43 178.3 125 65.6
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 4.9e-43 178.3 127 63.8
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 6.4e-43 177.9 142 61.3
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 6.4e-43 177.9 133 60.2
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 8.3e-43 177.6 129 64.3
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 1.4e-42 176.8 127 63.8
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 1.4e-42 176.8 133 59.4
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 3.2e-42 175.6 125 60.8
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 4.1e-42 175.3 123 66.7
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 4.1e-42 175.3 131 61.8
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 5.4e-42 174.9 133 60.9
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 7.0e-42 174.5 160 51.2
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 9.2e-42 174.1 130 66.9
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 2.0e-41 172.9 177 49.2
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 2.7e-41 172.6 125 63.2
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 4.6e-41 171.8 114 67.5
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.3e-40 170.2 125 61.6
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 3.0e-40 169.1 125 62.4
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 8.6e-40 167.5 121 63.6
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 8.6e-40 167.5 121 63.6
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 3.3e-39 165.6 110 69.1
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 7.3e-39 164.5 133 59.4
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 1.2e-38 163.7 126 57.1
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 2.6e-36 156.0 125 57.6
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 3.4e-28 129.0 129 51.2
Dinv41304 Davidia involucrata HOM05D005733 ORTHO05D007442 5.8e-28 128.3 92 67.4
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 4.9e-27 125.2 73 78.1
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 1.2e-25 120.6 104 51.9
FAN07G2740 Fragaria x ananassa HOM05D005733 ORTHO05D007442 4.6e-25 118.6 87 60.9
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 6.0e-25 118.2 77 71.4
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 5.6e-23 111.7 118 49.2
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.4e-21 107.1 69 72.5
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.4e-21 107.1 69 72.5
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.4e-21 107.1 69 72.5
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 2.4e-21 106.3 125 43.2
Os08g0260000 Oryza sativa ssp. japonica HOM05D005733 ORTHO05D007442 4.9e-19 98.6 83 50.6
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 1.4e-18 97.1 126 40.5
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 7.1e-18 94.7 76 55.3
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 2.1e-17 93.2 133 37.6
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 7.8e-17 91.3 124 40.3
arahy.Tifrunner.gnm1.ann1.65BVJ7 Arachis hypogaea HOM05D005733 ORTHO05D007442 1.3e-16 90.5 78 56.4
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 1.3e-16 90.5 124 40.3
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 3.0e-16 89.4 125 40.0
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 3.9e-16 89.0 137 38.0
Hund26406 Selenicereus undatus HOM05D005733 ORTHO05D007442 8.1e-14 81.3 84 50.0
Haze_22164 Corylus avellana HOM05D005733 ORTHO05D007442 6.9e-13 78.2 56 58.9
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.3e-11 73.9 60 50.0
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 1.7e-11 73.6 41 78.0
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 2.2e-11 73.2 45 71.1
BolC2t09466H Brassica oleracea HOM05D005733 ORTHO05D007442 6.4e-11 71.6 114 39.5
C02p34360 Brassica napus HOM05D005733 ORTHO05D007442 1.9e-10 70.1 114 38.6
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 4.2e-10 68.9 145 30.3
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 3.0e-08 62.8 37 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 4.3e-07 58.9 160 31.2
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 4.3e-07 58.9 37 67.6
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 5.6e-07 58.5 128 28.1
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 6.2e-06 55.1 148 31.8


User provided reference genes

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