Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g30250 Coffea canephora HOM05D003420 ORTHO05D003970 4.9e-85 317.8 163 100.0
Cc10_g06190 Coffea canephora HOM05D003420 ORTHO05D003970 2.6e-70 268.9 148 91.9
QL05p025121 Quercus lobata HOM05D003420 ORTHO05D003970 1.4e-68 263.1 147 89.8
QL05p046655 Quercus lobata HOM05D003420 ORTHO05D003970 1.4e-68 263.1 147 89.8
Migut.C00172 Erythranthe guttata HOM05D003420 ORTHO05D003970 4.2e-68 261.5 147 89.1
Potri.019G088100 Populus trichocarpa HOM05D003420 ORTHO05D003970 4.2e-68 261.5 147 88.4
MELO3C019945.2 Cucumis melo HOM05D003420 ORTHO05D003970 5.5e-68 261.2 147 89.1
CSS0045751 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 9.4e-68 260.4 147 89.1
Prupe.4G277400 Prunus persica HOM05D003420 ORTHO05D003970 9.4e-68 260.4 147 88.4
Cfa018227 Carpinus fangiana HOM05D003420 ORTHO05D003970 1.2e-67 260.0 147 88.4
MD14G1071700 Malus domestica HOM05D003420 ORTHO05D003970 1.2e-67 260.0 147 88.4
CsaV3_6G004750 Cucumis sativus L. HOM05D003420 ORTHO05D003970 1.6e-67 259.6 147 88.4
SGA_v2.0_scaffold48G18027 Striga asiatica HOM05D003420 ORTHO05D003970 2.1e-67 259.2 147 88.4
ClCG08G008720 Citrullus lanatus HOM05D003420 ORTHO05D003970 2.7e-67 258.8 147 87.8
FvH4_6g24280 Fragaria vesca HOM05D003420 ORTHO05D003970 2.7e-67 258.8 147 87.1
FAN02G2135 Fragaria x ananassa HOM05D003420 ORTHO05D003970 2.7e-67 258.8 147 87.1
FAN14G5243 Fragaria x ananassa HOM05D003420 ORTHO05D003970 2.7e-67 258.8 147 87.1
Manes.18G097100 Manihot esculenta HOM05D003420 ORTHO05D003970 2.7e-67 258.8 147 87.8
QL02p034947 Quercus lobata HOM05D003420 ORTHO05D003970 3.6e-67 258.5 147 87.1
THA.LOC104800101 Tarenaya hassleriana HOM05D003420 ORTHO05D003970 6.1e-67 257.7 148 85.8
TAR625G1262 Trochodendron aralioides HOM05D003420 ORTHO05D003970 6.1e-67 257.7 147 87.1
Nitab4.5_0001307g0060 Nicotiana tabacum HOM05D003420 ORTHO05D003970 7.9e-67 257.3 148 85.8
Nitab4.5_0002608g0090 Nicotiana tabacum HOM05D003420 ORTHO05D003970 7.9e-67 257.3 148 85.8
RcHm_v2.0_Chr3g0482841 Rosa chinensis HOM05D003420 ORTHO05D003970 7.9e-67 257.3 147 86.4
CiPaw.15G007400 Carya illinoinensis HOM05D003420 ORTHO05D003970 1.0e-66 256.9 147 87.1
Hma1.2p1_0276F.1_g111220 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 1.0e-66 256.9 147 87.8
PGR102G1634 Punica granatum HOM05D003420 ORTHO05D003970 1.4e-66 256.5 147 86.4
Sc02g0003530 Simmondsia chinensis HOM05D003420 ORTHO05D003970 1.4e-66 256.5 147 87.1
Actinidia22448 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.8e-66 256.1 147 87.1
Potri.013G117400 Populus trichocarpa HOM05D003420 ORTHO05D003970 1.8e-66 256.1 147 85.7
Sed0005269 Sechium edule HOM05D003420 ORTHO05D003970 1.8e-66 256.1 147 87.1
Thecc.01G140700 Theobroma cacao HOM05D003420 ORTHO05D003970 1.8e-66 256.1 147 86.4
CiPaw.15G007500 Carya illinoinensis HOM05D003420 ORTHO05D003970 2.3e-66 255.8 147 86.4
Peaxi162Scf00226g00925 Petunia axillaris HOM05D003420 ORTHO05D003970 2.3e-66 255.8 148 85.1
Ciclev10000376m.g Citrus clementina HOM05D003420 ORTHO05D003970 3.0e-66 255.4 147 86.4
Lj4g0005231 Lotus japonicus HOM05D003420 ORTHO05D003970 3.0e-66 255.4 147 86.4
MBI02_g44124_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 5.1e-66 254.6 147 85.7
Medtr4g024570 Medicago truncatula HOM05D003420 ORTHO05D003970 5.1e-66 254.6 145 86.2
Solyc04g072290.3 Solanum lycopersicum HOM05D003420 ORTHO05D003970 5.1e-66 254.6 148 85.1
TWI32G0430 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 5.1e-66 254.6 147 85.7
Duzib187G1187 Durio zibethinus HOM05D003420 ORTHO05D003970 6.7e-66 254.2 147 85.0
Sabra19G0098400 Salix brachista HOM05D003420 ORTHO05D003970 6.7e-66 254.2 149 85.9
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 6.7e-66 254.2 149 85.9
Sopen04g028480 Solanum pennellii HOM05D003420 ORTHO05D003970 6.7e-66 254.2 148 85.1
CSS0008854 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 8.8e-66 253.8 145 86.2
Psat7g231160 Pisum sativum HOM05D003420 ORTHO05D003970 8.8e-66 253.8 144 86.8
arahy.Tifrunner.gnm1.ann1.GQ31QR Arachis hypogaea HOM05D003420 ORTHO05D003970 1.5e-65 253.1 147 84.4
arahy.Tifrunner.gnm1.ann1.PV9APJ Arachis hypogaea HOM05D003420 ORTHO05D003970 1.5e-65 253.1 147 84.4
MSTRG.963 Avicennia marina HOM05D003420 ORTHO05D003970 1.5e-65 253.1 147 85.0
Phvul.010G082700 Phaseolus vulgaris HOM05D003420 ORTHO05D003970 1.5e-65 253.1 147 85.0
VMungo0331G1041 Vigna mungo HOM05D003420 ORTHO05D003970 1.5e-65 253.1 147 85.0
GSVIVG01022846001 Vitis vinifera HOM05D003420 ORTHO05D003970 1.5e-65 253.1 147 85.0
GSVIVG01038535001 Vitis vinifera HOM05D003420 ORTHO05D003970 1.5e-65 253.1 147 85.0
Ca_19959_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 2.0e-65 252.7 147 85.7
Haze_13387 Corylus avellana HOM05D003420 ORTHO05D003970 2.0e-65 252.7 142 88.7
Carub.0002s1858 Capsella rubella HOM05D003420 ORTHO05D003970 2.5e-65 252.3 147 84.4
Ciclev10000395m.g Citrus clementina HOM05D003420 ORTHO05D003970 2.5e-65 252.3 147 84.4
Thhalv10018180m.g Eutrema salsugineum HOM05D003420 ORTHO05D003970 2.5e-65 252.3 147 84.4
PSO447G0346 Papaver somniferum HOM05D003420 ORTHO05D003970 2.5e-65 252.3 147 85.0
Sp5g26850 Schrenkiella parvula HOM05D003420 ORTHO05D003970 2.5e-65 252.3 147 84.4
SpUn0020_0120 Schrenkiella parvula HOM05D003420 ORTHO05D003970 2.5e-65 252.3 147 84.4
Glyma.01G140600 Glycine max HOM05D003420 ORTHO05D003970 3.3e-65 251.9 147 84.4
Glyma.03G026900 Glycine max HOM05D003420 ORTHO05D003970 3.3e-65 251.9 147 84.4
BcaC08g45755 Brassica carinata HOM05D003420 ORTHO05D003970 4.3e-65 251.5 147 84.4
A07p30580 Brassica napus HOM05D003420 ORTHO05D003970 4.3e-65 251.5 147 84.4
Haze_17875 Corylus avellana HOM05D003420 ORTHO05D003970 4.3e-65 251.5 142 88.7
Gohir.A10G068000 Gossypium hirsutum HOM05D003420 ORTHO05D003970 4.3e-65 251.5 147 84.4
Gohir.D10G107600 Gossypium hirsutum HOM05D003420 ORTHO05D003970 4.3e-65 251.5 147 84.4
Gorai.011G117900 Gossypium raimondii HOM05D003420 ORTHO05D003970 4.3e-65 251.5 147 84.4
AL2G31400 Arabidopsis lyrata HOM05D003420 ORTHO05D003970 5.7e-65 251.1 147 83.7
AT1G71820 Arabidopsis thaliana HOM05D003420 ORTHO05D003970 5.7e-65 251.1 147 83.7
BcaC08g46613 Brassica carinata HOM05D003420 ORTHO05D003970 5.7e-65 251.1 147 84.4
CAN.G1010.15 Capsicum annuum HOM05D003420 ORTHO05D003970 5.7e-65 251.1 148 83.1
CARHR290940 Cardamine hirsuta HOM05D003420 ORTHO05D003970 5.7e-65 251.1 147 83.7
PSO210G4421 Papaver somniferum HOM05D003420 ORTHO05D003970 5.7e-65 251.1 147 85.0
Oeu027630.1 Olea europaea HOM05D003420 ORTHO05D003970 7.4e-65 250.8 160 81.2
Atru.chr6.1390 Acer truncatum HOM05D003420 ORTHO05D003970 9.7e-65 250.4 147 84.4
Atru.chr13.1894 Acer truncatum HOM05D003420 ORTHO05D003970 1.3e-64 250.0 147 83.7
BcaB03g15619 Brassica carinata HOM05D003420 ORTHO05D003970 1.3e-64 250.0 147 83.7
Eucgr.F04156 Eucalyptus grandis HOM05D003420 ORTHO05D003970 1.3e-64 250.0 147 84.4
Lalb_Chr19g0129871 Lupinus albus HOM05D003420 ORTHO05D003970 1.3e-64 250.0 147 83.7
Lalb_Chr01g0009891 Lupinus albus HOM05D003420 ORTHO05D003970 2.2e-64 249.2 147 83.0
Manes.02G187400 Manihot esculenta HOM05D003420 ORTHO05D003970 2.2e-64 249.2 147 83.0
Actinidia15626 Actinidia chinensis HOM05D003420 ORTHO05D003970 2.8e-64 248.8 147 84.4
Aqoxy2G01386 Aquilegia oxysepala HOM05D003420 ORTHO05D003970 3.7e-64 248.4 144 85.4
Lsat_1_v5_gn_6_100921 Lactuca sativa HOM05D003420 ORTHO05D003970 6.3e-64 247.7 147 81.6
Rhsim05G0166700 Rhododendron simsii HOM05D003420 ORTHO05D003970 6.3e-64 247.7 157 80.9
ATR0815G027 Amborella trichopoda HOM05D003420 ORTHO05D003970 8.2e-64 247.3 148 83.1
CANSAT25G1859 Cannabis sativa HOM05D003420 ORTHO05D003970 1.1e-63 246.9 147 82.3
HanXRQChr10g0278771 Helianthus annuus HOM05D003420 ORTHO05D003970 4.1e-63 245.0 147 82.3
CDE04G0884 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 5.3e-63 244.6 154 78.6
ECA246G4467 Erigeron canadensis HOM05D003420 ORTHO05D003970 5.3e-63 244.6 147 80.3
Aa31LG4G8810 Aethionema arabicum HOM05D003420 ORTHO05D003970 6.9e-63 244.2 151 81.5
Cpa.g.sc66.125 Carica papaya HOM05D003420 ORTHO05D003970 3.4e-62 241.9 147 83.7
Zm00001eb254950 Zea mays HOM05D003420 ORTHO05D003970 3.4e-62 241.9 147 79.6
A07p37970 Brassica napus HOM05D003420 ORTHO05D003970 1.0e-61 240.4 164 75.6
C06p45890 Brassica napus HOM05D003420 ORTHO05D003970 1.0e-61 240.4 164 75.6
Sabra13G0099500 Salix brachista HOM05D003420 ORTHO05D003970 1.3e-61 240.0 144 84.0
Migut.C00145 Erythranthe guttata HOM05D003420 ORTHO05D003970 5.0e-61 238.0 148 83.1
SEGI_39176 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 5.0e-61 238.0 147 78.9
C06p35360 Brassica napus HOM05D003420 ORTHO05D003970 6.5e-61 237.7 172 72.1
BolC6t38641H Brassica oleracea HOM05D003420 ORTHO05D003970 6.5e-61 237.7 172 72.1
DCAR_013169 Daucus carota HOM05D003420 ORTHO05D003970 5.5e-60 234.6 201 64.7
Atru.chr13.1960 Acer truncatum HOM05D003420 ORTHO05D003970 7.2e-60 234.2 147 81.0
Ah.09g232700 Amaranthus hybridus HOM05D003420 ORTHO05D003970 1.0e-58 230.3 173 69.9
HanXRQChr10g0278751 Helianthus annuus HOM05D003420 ORTHO05D003970 1.8e-58 229.6 145 76.6
TPR.G31331 Trifolium pratense HOM05D003420 ORTHO05D003970 3.0e-58 228.8 185 66.5
SMO298G0019 Selaginella moellendorffii HOM05D003420 ORTHO05D003970 8.8e-58 227.3 147 76.2
Mapoly0001s0359 Marchantia polymorpha HOM05D003420 ORTHO05D003970 3.3e-57 225.3 147 73.5
Hund17515 Selenicereus undatus HOM05D003420 ORTHO05D003970 2.8e-56 222.2 147 77.6
Psat4g195800 Pisum sativum HOM05D003420 ORTHO05D003970 4.8e-56 221.5 145 73.8
EL10Ac8g19742 Beta vulgaris HOM05D003420 ORTHO05D003970 2.4e-55 219.2 148 75.7
Migut.C00173 Erythranthe guttata HOM05D003420 ORTHO05D003970 1.9e-52 209.5 149 70.5
Pp3c8_3920 Physcomitrium patens HOM05D003420 ORTHO05D003970 1.9e-52 209.5 144 68.8
BraA07t30693Z Brassica rapa HOM05D003420 ORTHO05D003970 3.2e-52 208.8 147 72.8
Oeu042182.1 Olea europaea HOM05D003420 ORTHO05D003970 3.2e-52 208.8 148 73.6
BraA07t31362Z Brassica rapa HOM05D003420 ORTHO05D003970 4.2e-52 208.4 147 72.8
Lj4C710G5 Lonicera japonica HOM05D003420 ORTHO05D003970 4.2e-52 208.4 147 73.5
RcHm_v2.0_Chr1g0335051 Rosa chinensis HOM05D003420 ORTHO05D003970 2.1e-51 206.1 121 83.5
MBI05_g36581_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 4.7e-51 204.9 147 72.1
Glyma.03G026100 Glycine max HOM05D003420 ORTHO05D003970 1.4e-50 203.4 122 82.0
BolC6t39641H Brassica oleracea HOM05D003420 ORTHO05D003970 2.3e-50 202.6 147 70.7
Glyma.03G026400 Glycine max HOM05D003420 ORTHO05D003970 8.8e-50 200.7 135 76.3
MBI05_g43692_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 8.8e-50 200.7 147 70.1
DCAR_009600 Daucus carota HOM05D003420 ORTHO05D003970 4.4e-49 198.4 145 69.0
MBI05_g36592_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 7.4e-49 197.6 144 71.5
AUR62027528 Chenopodium quinoa HOM05D003420 ORTHO05D003970 9.7e-49 197.2 119 81.5
HPP92_002340 Vanilla planifolia HOM05D003420 ORTHO05D003970 1.8e-47 193.0 111 85.6
vmacro11081 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 2.4e-47 192.6 147 70.7
CDE06G1435 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 1.6e-46 189.9 121 76.0
HanXRQChr01g0002061 Helianthus annuus HOM05D003420 ORTHO05D003970 3.8e-45 185.3 158 63.9
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 5.0e-45 184.9 137 72.3
unitig_46.g18008 Utricularia gibba HOM05D003420 ORTHO05D003970 5.0e-45 184.9 119 75.6
Atru.chr7.57 Acer truncatum HOM05D003420 ORTHO05D003970 1.9e-44 183.0 147 67.3
Nn8g40471 Nelumbo nucifera HOM05D003420 ORTHO05D003970 8.0e-43 177.6 98 89.8
FAN05G2825 Fragaria x ananassa HOM05D003420 ORTHO05D003970 5.7e-41 171.4 147 63.9
Glyma.03G026300 Glycine max HOM05D003420 ORTHO05D003970 2.2e-37 159.5 113 71.7
CBR_g30506 Chara braunii HOM05D003420 ORTHO05D003970 8.5e-37 157.5 138 48.6
SHI09126 Sapria himalayana HOM05D003420 ORTHO05D003970 3.6e-35 152.1 107 71.0
AagrBONN_evm.TU.Sc2ySwM_228.2748 Anthoceros agrestis HOM05D003420 ORTHO05D003970 6.3e-32 141.4 147 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1498 Anthoceros agrestis HOM05D003420 ORTHO05D003970 1.3e-29 133.7 106 63.2
AUR62030227 Chenopodium quinoa HOM05D003420 ORTHO05D003970 5.7e-25 118.2 148 49.3
Sc02g0003480 Simmondsia chinensis HOM05D003420 ORTHO05D003970 1.4e-15 87.0 48 83.3
Cre17.g744847 Chlamydomonas reinhardtii HOM05D003420 ORTHO05D003970 7.0e-15 84.7 152 36.8
SEGI_29399 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 4.6e-14 82.0 98 48.0
Zm00001eb194380 Zea mays HOM05D003420 ORTHO05D003970 1.4e-07 60.5 40 72.5
COL.COLO4_12104 Corchorus olitorius HOM05D003420 ORTHO05D003970 1.2e-06 57.4 139 35.3


User provided reference genes

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