Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.0e-204 716.5 348 100.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.8e-183 644.8 342 89.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.2e-182 641.3 342 88.6
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.4e-182 641.0 342 88.3
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 6.0e-181 637.5 343 87.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-180 636.3 344 87.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.7e-180 636.0 342 87.7
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 2.3e-180 635.6 339 87.3
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 5.1e-180 634.4 342 88.3
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 5.1e-180 634.4 339 87.6
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 6.6e-180 634.0 339 88.8
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.9e-179 632.5 340 88.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.3e-179 631.7 340 87.9
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 9.6e-179 630.2 338 88.8
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 8.1e-178 627.1 342 86.5
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.1e-177 626.7 342 85.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.1e-177 625.2 340 87.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 4.0e-177 624.8 339 85.8
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 6.9e-177 624.0 340 86.2
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 6.9e-177 624.0 331 89.1
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 3.4e-176 621.7 355 83.7
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 3.4e-176 621.7 339 85.3
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.9e-175 618.6 339 85.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 3.8e-175 618.2 374 79.7
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 3.8e-175 618.2 339 85.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 6.4e-175 617.5 339 85.5
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.1e-174 616.7 339 85.3
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.4e-174 616.3 342 85.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 2.4e-174 615.5 341 84.5
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 7.1e-174 614.0 342 83.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.5e-173 611.7 337 84.9
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 4.6e-173 611.3 341 83.3
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 7.9e-173 610.5 341 83.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 7.9e-173 610.5 339 84.7
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 7.9e-173 610.5 339 84.7
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.0e-172 610.1 341 83.6
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.3e-172 609.8 341 83.6
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.3e-172 609.8 334 85.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.8e-172 609.4 337 84.9
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.0e-172 608.6 339 84.7
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 5.1e-172 607.8 342 83.0
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 6.7e-172 607.4 339 84.1
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 8.7e-172 607.1 339 84.4
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 8.7e-172 607.1 339 84.4
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.5e-171 606.3 342 82.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.9e-171 605.9 335 83.9
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.9e-171 605.9 334 83.2
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.5e-171 605.5 334 85.3
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 4.3e-171 604.7 341 84.5
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.3e-171 604.7 340 82.9
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 5.6e-171 604.4 342 81.9
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 9.6e-171 603.6 334 84.1
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 9.6e-171 603.6 334 84.1
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.3e-170 603.2 331 84.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.1e-170 602.4 341 83.0
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 3.7e-170 601.7 334 85.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 3.7e-170 601.7 343 83.7
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 3.7e-170 601.7 344 82.0
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 6.2e-170 600.9 338 84.0
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 8.1e-170 600.5 346 82.7
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 8.1e-170 600.5 331 83.1
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.1e-169 600.1 342 80.7
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.1e-169 600.1 339 83.8
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.1e-169 600.1 339 83.8
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.1e-169 600.1 333 83.2
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.4e-169 599.7 335 83.6
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.8e-169 599.4 334 84.4
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.8e-169 599.4 343 83.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 3.1e-169 598.6 339 82.9
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.1e-169 598.6 339 83.5
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.1e-169 598.6 335 83.3
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 6.9e-169 597.4 342 82.2
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 9.0e-169 597.0 335 83.3
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.5e-168 596.3 339 82.9
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.5e-168 596.3 338 82.2
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.6e-168 595.5 335 83.0
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 2.6e-168 595.5 341 80.4
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.4e-168 595.1 343 82.5
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.4e-168 595.1 350 80.6
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 3.8e-167 591.7 349 81.4
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 6.5e-167 590.9 375 76.0
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 5.5e-166 587.8 338 80.5
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 9.3e-166 587.0 341 82.1
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.0e-165 584.3 343 79.6
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 5.1e-164 581.3 337 80.1
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 6.7e-164 580.9 340 80.6
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.9e-163 579.3 342 80.4
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.5e-163 578.9 338 78.7
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.8e-162 575.5 342 80.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 8.2e-162 573.9 426 69.0
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.4e-161 573.2 334 80.2
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.0e-161 570.5 334 79.6
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.0e-160 569.3 342 76.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.7e-159 566.2 335 79.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.1e-153 545.0 335 77.9
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.6e-152 542.3 334 76.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 7.2e-150 534.3 343 72.9
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.6e-149 533.1 296 84.1
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.7e-149 532.3 329 75.4
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.0e-148 530.4 329 75.4
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.4e-148 530.0 343 71.7
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.3e-148 529.3 338 74.3
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.5e-147 526.6 351 72.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.0e-147 526.2 337 73.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.7e-146 521.9 344 70.9
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.3e-145 518.1 342 74.6
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 4.5e-144 515.0 343 69.1
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.6e-141 506.5 329 71.1
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 5.1e-140 501.5 244 98.0
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.6e-139 499.2 340 68.2
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.7e-138 496.5 329 71.7
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.9e-135 485.7 339 71.1
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.3e-132 476.1 339 66.1
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.0e-132 475.3 342 65.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.4e-129 466.1 243 87.2
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 5.3e-129 464.9 333 64.3
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.6e-128 463.4 341 63.9
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.7e-128 462.6 341 63.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.1e-125 451.4 347 62.8
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.7e-122 443.4 241 86.3
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 8.5e-119 431.0 344 66.6
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.5e-118 430.3 260 80.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.2e-115 420.6 222 90.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 7.5e-107 391.3 328 58.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.4e-105 386.3 246 75.6
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.6e-101 373.6 328 55.8
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.1e-92 344.4 275 64.7
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-76 291.2 192 70.3
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-76 290.8 158 86.7
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-73 281.2 149 84.6
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.5e-70 270.0 197 69.5
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 8.1e-69 265.0 241 57.7
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-62 244.2 235 58.7
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.0e-52 208.4 113 84.1
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.3e-49 198.4 107 80.4
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.9e-46 190.7 121 73.6
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.4e-38 162.2 88 86.4
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-35 153.7 93 78.5
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.2e-32 144.8 204 40.7
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.1e-30 138.3 82 80.5
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.0e-26 122.9 87 69.0
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-24 118.2 67 76.1
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.8e-23 114.4 65 73.8
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 5.2e-23 112.8 63 87.3
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 8.2e-21 105.5 246 31.7
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.1e-20 105.1 57 77.2
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.3e-18 98.2 48 97.9
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 8.8e-15 85.5 122 43.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-14 84.3 96 49.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.7e-13 80.1 38 86.8
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.0e-11 74.3 37 91.9
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.7e-10 71.2 81 49.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 9.4e-09 65.5 42 76.2
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 9.4e-09 65.5 69 53.6
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 5.2e-07 59.7 235 25.5


User provided reference genes

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