Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 2.5e-56 221.9 112 100.0
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 6.3e-39 164.1 89 92.1
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 3.4e-37 158.3 89 88.8
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 1.2e-26 123.2 89 69.7
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 1.7e-23 112.8 89 64.0
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 4.1e-22 108.2 85 63.5
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 5.9e-21 104.4 83 61.4
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 1.7e-20 102.8 89 61.8
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.1e-19 100.1 87 59.8
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 1.5e-19 99.8 87 62.1
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 1.5e-19 99.8 93 59.1
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 2.5e-19 99.0 87 58.6
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 2.5e-19 99.0 89 64.0
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 3.2e-19 98.6 87 58.6
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 7.2e-19 97.4 90 57.8
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 7.2e-19 97.4 87 56.3
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.6e-18 96.3 89 58.4
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.6e-18 96.3 87 59.8
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.1e-18 95.9 91 59.3
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 2.1e-18 95.9 90 56.7
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 2.7e-18 95.5 90 56.7
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 2.7e-18 95.5 90 56.7
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 3.6e-18 95.1 84 60.7
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 4.7e-18 94.7 90 55.6
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 4.7e-18 94.7 87 58.6
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 8.0e-18 94.0 89 57.3
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 8.0e-18 94.0 91 57.1
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 8.0e-18 94.0 89 60.7
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 8.0e-18 94.0 89 59.6
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 8.0e-18 94.0 89 58.4
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 8.0e-18 94.0 88 58.0
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.0e-17 93.6 89 59.6
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.0e-17 93.6 89 59.6
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.0e-17 93.6 87 62.1
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.4e-17 93.2 90 53.3
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 1.8e-17 92.8 87 58.6
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 2.3e-17 92.4 89 59.6
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 2.3e-17 92.4 101 56.4
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.0e-17 92.0 87 57.5
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.0e-17 92.0 85 61.2
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 4.0e-17 91.7 83 60.2
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 4.0e-17 91.7 89 59.6
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 4.0e-17 91.7 88 58.0
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 6.7e-17 90.9 89 55.1
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 8.8e-17 90.5 87 52.9
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 8.8e-17 90.5 87 52.9
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 8.8e-17 90.5 84 57.1
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 2.6e-16 89.0 89 52.8
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 3.3e-16 88.6 87 52.9
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 3.3e-16 88.6 88 55.7
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 4.4e-16 88.2 89 56.2
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 4.4e-16 88.2 89 56.2
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 5.7e-16 87.8 89 53.9
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 9.7e-16 87.0 89 56.2
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 9.7e-16 87.0 87 54.0
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 1.3e-15 86.7 85 56.5
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 1.7e-15 86.3 90 55.6
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.2e-15 85.9 69 63.8
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 6.3e-15 84.3 86 54.7
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 6.3e-15 84.3 84 54.8
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 8.2e-15 84.0 84 54.8
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 8.2e-15 84.0 86 53.5
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.1e-14 83.6 86 53.5
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 1.1e-14 83.6 67 64.2
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 1.4e-14 83.2 86 54.7
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 1.4e-14 83.2 86 54.7
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.4e-14 83.2 86 47.7
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.4e-14 83.2 89 55.1
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 1.4e-14 83.2 84 53.6
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 1.4e-14 83.2 86 53.5
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 1.8e-14 82.8 84 53.6
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 1.8e-14 82.8 89 52.8
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 2.4e-14 82.4 86 55.8
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 3.1e-14 82.0 85 52.9
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 5.3e-14 81.3 90 53.3
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 9.1e-14 80.5 89 52.8
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 9.1e-14 80.5 86 53.5
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 9.1e-14 80.5 86 53.5
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 1.2e-13 80.1 82 57.3
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.2e-13 80.1 87 52.9
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.2e-13 80.1 89 52.8
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.2e-13 80.1 89 52.8
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 1.2e-13 80.1 88 52.3
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 1.2e-13 80.1 89 44.9
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 2.0e-13 79.3 86 51.2
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 2.7e-13 79.0 88 50.0
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.5e-13 78.2 87 50.6
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 4.5e-13 78.2 89 52.8
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 5.9e-13 77.8 82 53.7
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 7.7e-13 77.4 86 51.2
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.0e-12 77.0 98 52.0
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 1.7e-12 76.3 87 49.4
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 2.2e-12 75.9 80 48.8
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 2.9e-12 75.5 81 53.1
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 5.0e-12 74.7 68 58.8
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 1.1e-11 73.6 113 42.5
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 1.1e-11 73.6 84 50.0
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.1e-11 73.6 68 57.4
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.5e-11 73.2 87 47.1
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 1.5e-11 73.2 72 56.9
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 3.2e-11 72.0 94 51.1
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 3.2e-11 72.0 92 50.0
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 5.5e-11 71.2 51 72.5
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 7.2e-11 70.9 117 38.5
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 2.1e-10 69.3 60 55.0
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 8.0e-10 67.4 65 56.9
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 1.4e-09 66.6 125 37.6
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 1.8e-09 66.2 63 52.4
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.0e-09 65.5 68 50.0
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 4.0e-09 65.1 106 41.5
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 6.8e-09 64.3 68 50.0
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 6.8e-09 64.3 88 44.3
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 8.8e-09 63.9 88 45.5
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 1.2e-08 63.5 68 48.5
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 7.5e-08 60.8 111 39.6
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 1.7e-07 59.7 88 44.3
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 8.3e-07 57.4 88 40.9
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.4e-06 56.6 90 42.2
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 1.8e-06 56.2 54 51.9


User provided reference genes

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