Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g29620 Coffea canephora HOM05D003129 ORTHO05D026744 3.4e-95 351.7 177 100.0
Dinv40631 Davidia involucrata HOM05D003129 ORTHO05D004326 1.9e-82 309.3 172 90.1
Sopen10g004580 Solanum pennellii HOM05D003129 ORTHO05D004326 3.3e-82 308.5 173 89.0
Solyc10g008800.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 5.5e-82 307.8 173 89.0
Lj2A294T71 Lonicera japonica HOM05D003129 ORTHO05D004326 9.5e-82 307.0 173 89.0
Migut.M01074 Erythranthe guttata HOM05D003129 ORTHO05D004326 2.8e-81 305.4 176 84.7
Dinv17376 Davidia involucrata HOM05D003129 ORTHO05D004326 8.0e-81 303.9 172 89.0
MSTRG.15833 Avicennia marina HOM05D003129 ORTHO05D004326 1.0e-80 303.5 176 84.1
Hma1.2p1_0155F.1_g068510 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 3.0e-80 302.0 171 87.1
Peaxi162Scf00269g00314 Petunia axillaris HOM05D003129 ORTHO05D004326 3.0e-80 302.0 168 88.7
Nitab4.5_0002114g0030 Nicotiana tabacum HOM05D003129 ORTHO05D004326 4.0e-80 301.6 167 89.8
TAR627G0274 Trochodendron aralioides HOM05D003129 ORTHO05D004326 5.2e-80 301.2 172 86.0
GSVIVG01021154001 Vitis vinifera HOM05D003129 ORTHO05D004326 2.6e-79 298.9 172 85.5
HanXRQChr04g0117191 Helianthus annuus HOM05D003129 ORTHO05D004326 3.4e-79 298.5 172 86.6
HanXRQChr15g0481311 Helianthus annuus HOM05D003129 ORTHO05D004326 3.4e-79 298.5 173 86.1
ECA236G4078 Erigeron canadensis HOM05D003129 ORTHO05D004326 1.3e-78 296.6 173 85.0
Nn1g04301 Nelumbo nucifera HOM05D003129 ORTHO05D004326 1.7e-78 296.2 172 83.1
SalBow8G3208 Salvia bowleyana HOM05D003129 ORTHO05D004326 2.2e-78 295.8 176 84.1
Lsat_1_v5_gn_4_50661 Lactuca sativa HOM05D003129 ORTHO05D004326 1.4e-77 293.1 171 87.1
Sc05g0007260 Simmondsia chinensis HOM05D003129 ORTHO05D004326 5.4e-77 291.2 172 82.6
Hma1.2p1_0608F.1_g188220 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 7.0e-77 290.8 171 84.2
Oeu062329.1 Olea europaea HOM05D003129 ORTHO05D004326 1.2e-76 290.0 166 85.5
Aqoxy1G02212 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 3.5e-76 288.5 171 83.0
TAR624G0766 Trochodendron aralioides HOM05D003129 ORTHO05D004326 3.5e-76 288.5 171 83.0
Gohir.D06G208800 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.0e-75 287.0 171 83.0
Gorai.010G242700 Gossypium raimondii HOM05D003129 ORTHO05D004326 1.7e-75 286.2 171 83.0
GSVIVG01014247001 Vitis vinifera HOM05D003129 ORTHO05D004326 1.7e-75 286.2 172 80.8
Gohir.A10G029400 Gossypium hirsutum HOM05D003129 ORTHO05D004326 3.9e-75 285.0 171 83.0
Gohir.D10G029900 Gossypium hirsutum HOM05D003129 ORTHO05D004326 3.9e-75 285.0 171 83.0
Gorai.011G031800 Gossypium raimondii HOM05D003129 ORTHO05D004326 3.9e-75 285.0 171 83.0
Nn1g06337 Nelumbo nucifera HOM05D003129 ORTHO05D004326 6.6e-75 284.3 171 80.7
Thecc.06G176900 Theobroma cacao HOM05D003129 ORTHO05D004326 8.6e-75 283.9 171 82.5
CANSAT35G1487 Cannabis sativa HOM05D003129 ORTHO05D004326 1.1e-74 283.5 172 82.0
HanXRQChr11g0327221 Helianthus annuus HOM05D003129 ORTHO05D004326 2.5e-74 282.3 173 82.1
CiPaw.09G066600 Carya illinoinensis HOM05D003129 ORTHO05D004326 7.3e-74 280.8 172 80.2
Ciclev10014801m.g Citrus clementina HOM05D003129 ORTHO05D004326 7.3e-74 280.8 172 82.0
ClCG01G023490 Citrullus lanatus HOM05D003129 ORTHO05D004326 9.5e-74 280.4 172 81.4
MELO3C007237.2 Cucumis melo HOM05D003129 ORTHO05D004326 1.6e-73 279.6 172 80.8
CsaV3_6G050610 Cucumis sativus L. HOM05D003129 ORTHO05D004326 1.6e-73 279.6 172 80.8
TWI63G0550 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 2.1e-73 279.3 172 79.7
Sed0018741 Sechium edule HOM05D003129 ORTHO05D004326 6.1e-73 277.7 172 80.8
Atru.chr10.1742 Acer truncatum HOM05D003129 ORTHO05D004326 8.0e-73 277.3 172 80.2
Prupe.4G056400 Prunus persica HOM05D003129 ORTHO05D004326 8.0e-73 277.3 175 78.9
Dinv14957 Davidia involucrata HOM05D003129 ORTHO05D004326 1.8e-72 276.2 173 78.6
Manes.17G052000 Manihot esculenta HOM05D003129 ORTHO05D004326 1.8e-72 276.2 170 79.4
Rhsim02G0138500 Rhododendron simsii HOM05D003129 ORTHO05D004326 2.3e-72 275.8 214 70.1
Actinidia18785 Actinidia chinensis HOM05D003129 ORTHO05D004326 4.0e-72 275.0 171 78.4
ATR0602G129 Amborella trichopoda HOM05D003129 ORTHO05D004326 4.0e-72 275.0 171 79.5
CDE02G2353 Ceratophyllum demersum HOM05D003129 ORTHO05D004326 4.0e-72 275.0 175 78.9
COL.COLO4_31382 Corchorus olitorius HOM05D003129 ORTHO05D004326 4.0e-72 275.0 160 86.9
TWI38G1536 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 5.2e-72 274.6 172 79.1
vmacro15954 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 5.2e-72 274.6 207 70.5
Duzib235G0248 Durio zibethinus HOM05D003129 ORTHO05D004326 6.8e-72 274.2 173 80.3
MD05G1306200 Malus domestica HOM05D003129 ORTHO05D004326 6.8e-72 274.2 175 78.3
Cpa.g.sc7.28 Carica papaya HOM05D003129 ORTHO05D004326 8.9e-72 273.9 171 80.7
Duzib192G0848 Durio zibethinus HOM05D003129 ORTHO05D004326 8.9e-72 273.9 173 80.3
MD10G1285200 Malus domestica HOM05D003129 ORTHO05D004326 8.9e-72 273.9 175 77.7
TWI38G0456 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 8.9e-72 273.9 172 79.1
Mapoly0091s0056 Marchantia polymorpha HOM05D003129 ORTHO05D004326 1.2e-71 273.5 172 75.6
PGR004G1912 Punica granatum HOM05D003129 ORTHO05D004326 2.0e-71 272.7 172 78.5
CiPaw.10G055300 Carya illinoinensis HOM05D003129 ORTHO05D004326 2.6e-71 272.3 172 78.5
SGA_v2.0_scaffold66G22240 Striga asiatica HOM05D003129 ORTHO05D004326 2.6e-71 272.3 196 72.4
Aa31LG9G13850 Aethionema arabicum HOM05D003129 ORTHO05D004326 9.8e-71 270.4 172 77.3
PSO675G6268 Papaver somniferum HOM05D003129 ORTHO05D004326 9.8e-71 270.4 171 77.2
ECA234G1267 Erigeron canadensis HOM05D003129 ORTHO05D004326 1.7e-70 269.6 171 80.1
PSO541G6176 Papaver somniferum HOM05D003129 ORTHO05D004326 1.7e-70 269.6 171 77.2
Rhsim04G0023800 Rhododendron simsii HOM05D003129 ORTHO05D004326 2.2e-70 269.2 171 77.2
RcHm_v2.0_Chr5g0009911 Rosa chinensis HOM05D003129 ORTHO05D004326 3.7e-70 268.5 174 76.4
Sed0013050 Sechium edule HOM05D003129 ORTHO05D004326 4.9e-70 268.1 172 77.9
arahy.Tifrunner.gnm1.ann1.32PFVB Arachis hypogaea HOM05D003129 ORTHO05D004326 6.4e-70 267.7 172 75.0
arahy.Tifrunner.gnm1.ann1.X0U75U Arachis hypogaea HOM05D003129 ORTHO05D004326 6.4e-70 267.7 172 75.0
Glyma.13G172200 Glycine max HOM05D003129 ORTHO05D004326 8.3e-70 267.3 172 75.6
Lalb_Chr09g0327941 Lupinus albus HOM05D003129 ORTHO05D004326 8.3e-70 267.3 172 76.2
VMungo0251G0702 Vigna mungo HOM05D003129 ORTHO05D004326 8.3e-70 267.3 172 75.6
Thhalv10016466m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 1.4e-69 266.5 172 75.6
Lj1C835G5 Lonicera japonica HOM05D003129 ORTHO05D004326 1.4e-69 266.5 172 76.2
Potri.004G052300 Populus trichocarpa HOM05D003129 ORTHO05D004326 2.4e-69 265.8 175 76.0
BcaC01g05811 Brassica carinata HOM05D003129 ORTHO05D004326 4.1e-69 265.0 172 76.2
C03p22160 Brassica napus HOM05D003129 ORTHO05D004326 4.1e-69 265.0 172 76.2
BolC3t14601H Brassica oleracea HOM05D003129 ORTHO05D004326 4.1e-69 265.0 172 76.2
BraA03t11158Z Brassica rapa HOM05D003129 ORTHO05D004326 4.1e-69 265.0 172 76.2
FvH4_3g08240 Fragaria vesca HOM05D003129 ORTHO05D004326 4.1e-69 265.0 174 75.9
Sp4g16390 Schrenkiella parvula HOM05D003129 ORTHO05D004326 4.1e-69 265.0 172 75.6
BcaB01g03907 Brassica carinata HOM05D003129 ORTHO05D004326 5.4e-69 264.6 172 76.2
Glyma.07G203600 Glycine max HOM05D003129 ORTHO05D004326 7.0e-69 264.2 172 75.0
Lalb_Chr05g0218661 Lupinus albus HOM05D003129 ORTHO05D004326 7.0e-69 264.2 172 75.0
Phvul.003G057200 Phaseolus vulgaris HOM05D003129 ORTHO05D004326 7.0e-69 264.2 172 75.0
A03p19000 Brassica napus HOM05D003129 ORTHO05D004326 9.2e-69 263.8 172 75.6
Ah.10g033800 Amaranthus hybridus HOM05D003129 ORTHO05D004326 1.2e-68 263.5 172 76.2
THA.LOC104814245 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 1.2e-68 263.5 172 76.7
THA.LOC104812630 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 1.6e-68 263.1 172 76.2
Carub.0004s1567 Capsella rubella HOM05D003129 ORTHO05D004326 2.0e-68 262.7 172 75.0
Lj4g0011162 Lotus japonicus HOM05D003129 ORTHO05D004326 2.7e-68 262.3 172 73.3
Potri.011G062500 Populus trichocarpa HOM05D003129 ORTHO05D004326 2.7e-68 262.3 175 75.4
FAN11G2423 Fragaria x ananassa HOM05D003129 ORTHO05D004326 3.5e-68 261.9 181 73.5
CARHR128120 Cardamine hirsuta HOM05D003129 ORTHO05D004326 6.0e-68 261.2 172 74.4
Eucgr.D00571 Eucalyptus grandis HOM05D003129 ORTHO05D004326 6.0e-68 261.2 171 73.7
AL4G29920 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 7.8e-68 260.8 172 74.4
FAN21G0899 Fragaria x ananassa HOM05D003129 ORTHO05D004326 1.7e-67 259.6 181 72.4
AT2G34040 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 2.3e-67 259.2 172 73.8
FAN25G1535 Fragaria x ananassa HOM05D003129 ORTHO05D004326 3.0e-67 258.8 181 72.9
Pp3c3_22040 Physcomitrium patens HOM05D003129 ORTHO05D004326 3.0e-67 258.8 172 70.9
Aqoxy4G00539 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 3.9e-67 258.5 171 74.3
SMO364G0322 Selaginella moellendorffii HOM05D003129 ORTHO05D004326 3.9e-67 258.5 172 71.5
C04p15070 Brassica napus HOM05D003129 ORTHO05D004326 6.6e-67 257.7 172 73.3
FAN16G1697 Fragaria x ananassa HOM05D003129 ORTHO05D004326 1.5e-66 256.5 181 72.4
Solyc10g007150.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 1.5e-66 256.5 172 73.8
Sopen10g003050 Solanum pennellii HOM05D003129 ORTHO05D004326 1.5e-66 256.5 172 73.8
EL10Ac8g20476 Beta vulgaris HOM05D003129 ORTHO05D004326 1.9e-66 256.1 207 63.8
SGA_v2.0_scaffold130G34337 Striga asiatica HOM05D003129 ORTHO05D004326 2.5e-66 255.8 170 74.7
BolC4t23083H Brassica oleracea HOM05D003129 ORTHO05D004326 5.6e-66 254.6 172 72.7
HPP92_002946 Vanilla planifolia HOM05D003129 ORTHO05D004326 7.3e-66 254.2 170 71.8
Ca_26044_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 9.5e-66 253.8 172 70.3
DCAR_019584 Daucus carota HOM05D003129 ORTHO05D004326 9.5e-66 253.8 175 71.4
CAN.G1119.14 Capsicum annuum HOM05D003129 ORTHO05D004326 1.6e-65 253.1 172 72.1
Peaxi162Scf00027g00106 Petunia axillaris HOM05D003129 ORTHO05D004326 2.8e-65 252.3 175 71.4
Thhalv10007287m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 3.6e-65 251.9 172 72.1
MSTRG.14212 Avicennia marina HOM05D003129 ORTHO05D004326 1.1e-64 250.4 170 72.9
Aa31LG6G11500 Aethionema arabicum HOM05D003129 ORTHO05D004326 5.2e-64 248.1 173 73.4
Carub.0001s2722 Capsella rubella HOM05D003129 ORTHO05D004326 6.8e-64 247.7 172 71.5
Psat7g118240 Pisum sativum HOM05D003129 ORTHO05D004326 6.8e-64 247.7 175 69.1
SGA_v2.0_scaffold70G23706 Striga asiatica HOM05D003129 ORTHO05D004326 1.5e-63 246.5 190 66.3
AL1G42740 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 2.6e-63 245.7 172 72.1
AagrBONN_evm.TU.Sc2ySwM_228.5751 Anthoceros agrestis HOM05D003129 ORTHO05D004326 3.4e-63 245.4 174 68.4
Sp1g24960 Schrenkiella parvula HOM05D003129 ORTHO05D004326 3.4e-63 245.4 172 69.8
vmacro09507 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 3.4e-63 245.4 227 59.0
CAN.G361.6 Capsicum annuum HOM05D003129 ORTHO05D004326 5.8e-63 244.6 138 87.0
unitig_699.g19233 Utricularia gibba HOM05D003129 ORTHO05D004326 9.8e-63 243.8 170 71.2
CARHR028240 Cardamine hirsuta HOM05D003129 ORTHO05D004326 1.7e-62 243.0 171 73.1
Gohir.A06G201000 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.7e-62 243.0 171 73.7
SalBow7G0623 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.7e-62 243.0 170 69.4
SalBow7G1178 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.7e-62 243.0 170 69.4
Cc05_g11500 Coffea canephora HOM05D003129 ORTHO05D004326 2.9e-62 242.3 172 69.8
Medtr4g087935 Medicago truncatula HOM05D003129 ORTHO05D004326 2.9e-62 242.3 171 69.0
unitig_0.g2268 Utricularia gibba HOM05D003129 ORTHO05D004326 3.7e-62 241.9 170 70.0
unitig_52.g17399 Utricularia gibba HOM05D003129 ORTHO05D004326 6.4e-62 241.1 170 69.4
Gohir.A06G200950 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.1e-60 236.1 178 70.8
CSS0027425 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 6.6e-59 231.1 172 69.8
Migut.H01970 Erythranthe guttata HOM05D003129 ORTHO05D004326 8.6e-59 230.7 156 73.1
Os02g0313400 Oryza sativa ssp. japonica HOM05D003129 ORTHO05D004326 8.6e-59 230.7 168 67.3
Zm00001eb203280 Zea mays HOM05D003129 ORTHO05D004326 3.3e-58 228.8 168 67.3
Zm00001eb235260 Zea mays HOM05D003129 ORTHO05D004326 4.3e-58 228.4 167 67.1
SHI34908 Sapria himalayana HOM05D003129 ORTHO05D004326 1.6e-57 226.5 178 62.9
Actinidia35228 Actinidia chinensis HOM05D003129 ORTHO05D004326 4.0e-56 221.9 135 77.8
CSS0050257 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 6.8e-56 221.1 172 68.0
MBI06_g25719_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D004326 5.8e-55 218.0 134 79.1
RcHm_v2.0_Chr1g0362691 Rosa chinensis HOM05D003129 ORTHO05D004326 5.8e-55 218.0 171 66.7
Sabra04G0033100 Salix brachista HOM05D003129 ORTHO05D004326 8.3e-54 214.2 175 65.7
Sabra11G0044300 Salix brachista HOM05D003129 ORTHO05D004326 1.9e-53 213.0 175 65.7
AT1G29030 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 3.2e-53 212.2 172 65.7
Sabra04G0033600 Salix brachista HOM05D003129 ORTHO05D004326 4.1e-53 211.8 175 65.1
Hund21191 Selenicereus undatus HOM05D003129 ORTHO05D004326 7.1e-53 211.1 160 68.8
CBR_g34638 Chara braunii HOM05D003129 ORTHO05D004326 9.2e-53 210.7 171 60.2
RcHm_v2.0_Chr7g0217661 Rosa chinensis HOM05D003129 ORTHO05D004326 3.0e-51 205.7 134 76.1
AUR62014921 Chenopodium quinoa HOM05D003129 ORTHO05D004326 3.1e-48 195.7 172 62.2
AUR62031128 Chenopodium quinoa HOM05D003129 ORTHO05D004326 2.0e-47 193.0 172 61.6
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 1.3e-46 190.3 173 57.2
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 3.8e-46 188.7 172 59.3
TPR.G40554 Trifolium pratense HOM05D003129 ORTHO05D004326 9.3e-45 184.1 136 62.5
Cc02_g14340 Coffea canephora HOM05D003129 ORTHO05D016405 3.3e-42 175.6 89 95.5
Cfa000558 Carpinus fangiana HOM05D003129 ORTHO05D004326 4.3e-42 175.3 171 56.1
BcaC05g26915 Brassica carinata HOM05D003129 ORTHO05D016405 2.9e-38 162.5 181 50.8
Nitab4.5_0001208g0080 Nicotiana tabacum HOM05D003129 ORTHO05D004326 6.4e-38 161.4 172 53.5
Haze_06317 Corylus avellana HOM05D003129 ORTHO05D004326 5.6e-34 148.3 91 79.1
Oeu043093.1 Olea europaea HOM05D003129 ORTHO05D004326 5.8e-31 138.3 77 81.8
DCAR_006587 Daucus carota HOM05D003129 ORTHO05D004326 1.7e-30 136.7 173 50.3
Oeu043092.1 Olea europaea HOM05D003129 ORTHO05D004326 2.5e-26 122.9 72 83.3
Atru.chr12.905 Acer truncatum HOM05D003129 ORTHO05D016405 4.9e-22 108.6 118 49.2
A09p37370 Brassica napus HOM05D003129 ORTHO05D004326 1.4e-21 107.1 72 76.4
AT1G23935 Arabidopsis thaliana HOM05D000929 ORTHO05D038725 1.0e-19 100.9 159 39.6
AL1G37660 Arabidopsis lyrata HOM05D003129 ORTHO05D038725 5.1e-19 98.6 117 47.0
Atru.chr12.904 Acer truncatum HOM05D003129 ORTHO05D016405 1.5e-18 97.1 100 50.0
C05p27700 Brassica napus HOM05D003129 ORTHO05D016405 6.9e-16 88.2 84 53.6
BolC5t31490H Brassica oleracea HOM05D003129 ORTHO05D016405 6.9e-16 88.2 84 53.6
TPR.G16267 Trifolium pratense HOM05D003129 ORTHO05D004326 9.0e-16 87.8 58 69.0
GSVIVG01015737001 Vitis vinifera HOM05D003129 ORTHO05D016405 9.3e-13 77.8 47 72.3
Oeu014382.1 Olea europaea HOM05D003129 ORTHO05D026744 1.6e-12 77.0 41 90.2
CDE02G0897 Ceratophyllum demersum HOM05D003129 ORTHO05D026744 3.5e-12 75.9 105 45.7
Aqoxy6G03045 Aquilegia oxysepala HOM05D003129 ORTHO05D026744 7.9e-12 74.7 71 59.2


User provided reference genes

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