Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g29610 Coffea canephora HOM05D003129 ORTHO05D154538 4.1e-66 254.6 130 100.0
Cc02_g14350 Coffea canephora HOM05D003129 ORTHO05D004326 6.6e-32 141.0 64 100.0
Lsat_1_v5_gn_4_50661 Lactuca sativa HOM05D003129 ORTHO05D004326 2.1e-30 136.0 66 90.9
CARHR028240 Cardamine hirsuta HOM05D003129 ORTHO05D004326 3.6e-30 135.2 66 90.9
GSVIVG01021154001 Vitis vinifera HOM05D003129 ORTHO05D004326 3.6e-30 135.2 66 92.4
HanXRQChr11g0327221 Helianthus annuus HOM05D003129 ORTHO05D004326 4.7e-30 134.8 66 90.9
Lj2A294T71 Lonicera japonica HOM05D003129 ORTHO05D004326 4.7e-30 134.8 66 90.9
GSVIVG01014247001 Vitis vinifera HOM05D003129 ORTHO05D004326 6.2e-30 134.4 66 89.4
Peaxi162Scf00269g00314 Petunia axillaris HOM05D003129 ORTHO05D004326 8.1e-30 134.0 70 84.3
Cpa.g.sc7.28 Carica papaya HOM05D003129 ORTHO05D004326 1.1e-29 133.7 66 90.9
Carub.0001s2722 Capsella rubella HOM05D003129 ORTHO05D004326 1.4e-29 133.3 66 90.9
CiPaw.10G055300 Carya illinoinensis HOM05D003129 ORTHO05D004326 1.4e-29 133.3 65 92.3
Dinv40631 Davidia involucrata HOM05D003129 ORTHO05D004326 1.8e-29 132.9 66 90.9
HanXRQChr04g0117191 Helianthus annuus HOM05D003129 ORTHO05D004326 2.3e-29 132.5 66 87.9
CiPaw.09G066600 Carya illinoinensis HOM05D003129 ORTHO05D004326 3.1e-29 132.1 66 90.9
PGR004G1912 Punica granatum HOM05D003129 ORTHO05D004326 3.1e-29 132.1 66 89.4
AL1G42740 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 4.0e-29 131.7 66 89.4
Eucgr.D00571 Eucalyptus grandis HOM05D003129 ORTHO05D004326 4.0e-29 131.7 66 89.4
THA.LOC104814245 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 4.0e-29 131.7 66 87.9
AT1G29030 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 5.2e-29 131.3 66 89.4
Gohir.A10G029400 Gossypium hirsutum HOM05D003129 ORTHO05D004326 5.2e-29 131.3 66 89.4
Gohir.D10G029900 Gossypium hirsutum HOM05D003129 ORTHO05D004326 5.2e-29 131.3 66 89.4
Gorai.011G031800 Gossypium raimondii HOM05D003129 ORTHO05D004326 5.2e-29 131.3 66 89.4
Hma1.2p1_0155F.1_g068510 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 5.2e-29 131.3 66 89.4
Solyc10g008800.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 5.2e-29 131.3 66 90.9
Sopen10g004580 Solanum pennellii HOM05D003129 ORTHO05D004326 5.2e-29 131.3 66 90.9
Aqoxy4G00539 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 8.9e-29 130.6 70 84.3
Haze_06317 Corylus avellana HOM05D003129 ORTHO05D004326 8.9e-29 130.6 68 86.8
Dinv17376 Davidia involucrata HOM05D003129 ORTHO05D004326 8.9e-29 130.6 66 89.4
Thhalv10016466m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 8.9e-29 130.6 66 89.4
Gohir.A06G200950 Gossypium hirsutum HOM05D003129 ORTHO05D004326 8.9e-29 130.6 66 87.9
Gohir.A06G201000 Gossypium hirsutum HOM05D003129 ORTHO05D004326 8.9e-29 130.6 66 87.9
Aa31LG6G11500 Aethionema arabicum HOM05D003129 ORTHO05D004326 1.2e-28 130.2 66 89.4
Nitab4.5_0002114g0030 Nicotiana tabacum HOM05D003129 ORTHO05D004326 1.2e-28 130.2 67 88.1
THA.LOC104812630 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 1.2e-28 130.2 66 86.4
BcaB01g03907 Brassica carinata HOM05D003129 ORTHO05D004326 2.0e-28 129.4 66 87.9
AUR62014921 Chenopodium quinoa HOM05D003129 ORTHO05D004326 2.0e-28 129.4 66 86.4
AUR62031128 Chenopodium quinoa HOM05D003129 ORTHO05D004326 2.0e-28 129.4 66 86.4
Sc05g0007260 Simmondsia chinensis HOM05D003129 ORTHO05D004326 2.0e-28 129.4 66 89.4
A03p19000 Brassica napus HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 86.4
BraA03t11158Z Brassica rapa HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 86.4
ClCG01G023490 Citrullus lanatus HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 87.9
MELO3C007237.2 Cucumis melo HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 87.9
CsaV3_6G050610 Cucumis sativus L. HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 87.9
ECA236G4078 Erigeron canadensis HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 87.9
Sed0013050 Sechium edule HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 87.9
Sed0018741 Sechium edule HOM05D003129 ORTHO05D004326 2.6e-28 129.0 66 87.9
Aqoxy1G02212 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 3.4e-28 128.6 66 87.9
Gohir.D06G208800 Gossypium hirsutum HOM05D003129 ORTHO05D004326 3.4e-28 128.6 66 86.4
Gorai.010G242700 Gossypium raimondii HOM05D003129 ORTHO05D004326 3.4e-28 128.6 66 86.4
Manes.17G052000 Manihot esculenta HOM05D003129 ORTHO05D004326 3.4e-28 128.6 65 89.2
Sp1g24960 Schrenkiella parvula HOM05D003129 ORTHO05D004326 3.4e-28 128.6 66 87.9
TAR624G0766 Trochodendron aralioides HOM05D003129 ORTHO05D004326 3.4e-28 128.6 66 86.4
BcaC01g05811 Brassica carinata HOM05D003129 ORTHO05D004326 4.4e-28 128.3 66 86.4
C03p22160 Brassica napus HOM05D003129 ORTHO05D004326 4.4e-28 128.3 66 86.4
BolC3t14601H Brassica oleracea HOM05D003129 ORTHO05D004326 4.4e-28 128.3 66 86.4
Ciclev10014801m.g Citrus clementina HOM05D003129 ORTHO05D004326 4.4e-28 128.3 67 88.1
Nn1g06337 Nelumbo nucifera HOM05D003129 ORTHO05D004326 4.4e-28 128.3 66 87.9
Thecc.06G176900 Theobroma cacao HOM05D003129 ORTHO05D004326 4.4e-28 128.3 66 86.4
Aa31LG9G13850 Aethionema arabicum HOM05D003129 ORTHO05D004326 5.8e-28 127.9 66 84.8
HanXRQChr15g0481311 Helianthus annuus HOM05D003129 ORTHO05D004326 5.8e-28 127.9 66 86.4
Sabra11G0044300 Salix brachista HOM05D003129 ORTHO05D004326 5.8e-28 127.9 66 86.4
AL4G29920 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 7.5e-28 127.5 65 87.7
AT2G34040 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 7.5e-28 127.5 65 87.7
CANSAT35G1487 Cannabis sativa HOM05D003129 ORTHO05D004326 7.5e-28 127.5 66 87.9
Carub.0004s1567 Capsella rubella HOM05D003129 ORTHO05D004326 7.5e-28 127.5 65 87.7
COL.COLO4_31382 Corchorus olitorius HOM05D003129 ORTHO05D004326 7.5e-28 127.5 66 84.8
MBI06_g25719_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D004326 7.5e-28 127.5 66 86.4
Nn1g04301 Nelumbo nucifera HOM05D003129 ORTHO05D004326 7.5e-28 127.5 66 87.9
Oeu062329.1 Olea europaea HOM05D003129 ORTHO05D004326 7.5e-28 127.5 78 75.6
Sp4g16390 Schrenkiella parvula HOM05D003129 ORTHO05D004326 7.5e-28 127.5 66 86.4
Hund21191 Selenicereus undatus HOM05D003129 ORTHO05D004326 7.5e-28 127.5 66 84.8
Atru.chr10.1742 Acer truncatum HOM05D003129 ORTHO05D004326 9.9e-28 127.1 71 83.1
Potri.004G052300 Populus trichocarpa HOM05D003129 ORTHO05D004326 9.9e-28 127.1 66 86.4
TWI38G1536 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 9.9e-28 127.1 66 87.9
CARHR128120 Cardamine hirsuta HOM05D003129 ORTHO05D004326 1.3e-27 126.7 65 86.2
MD05G1306200 Malus domestica HOM05D003129 ORTHO05D004326 1.3e-27 126.7 66 87.9
vmacro15954 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 1.3e-27 126.7 66 87.9
Duzib235G0248 Durio zibethinus HOM05D003129 ORTHO05D004326 1.7e-27 126.3 65 86.2
ECA234G1267 Erigeron canadensis HOM05D003129 ORTHO05D004326 1.7e-27 126.3 66 84.8
Sabra04G0033100 Salix brachista HOM05D003129 ORTHO05D004326 1.7e-27 126.3 66 84.8
C04p15070 Brassica napus HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
Thhalv10007287m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 86.4
Glyma.07G203600 Glycine max HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
Glyma.13G172200 Glycine max HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
Hma1.2p1_0608F.1_g188220 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 87.9
Lalb_Chr05g0218661 Lupinus albus HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
Lalb_Chr09g0327941 Lupinus albus HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
Phvul.003G057200 Phaseolus vulgaris HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
Psat7g118240 Pisum sativum HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
SalBow8G3208 Salvia bowleyana HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 87.9
TWI63G0550 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 2.2e-27 125.9 70 81.4
VMungo0251G0702 Vigna mungo HOM05D003129 ORTHO05D004326 2.2e-27 125.9 66 84.8
Ca_26044_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 83.3
FvH4_3g08240 Fragaria vesca HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
FAN11G2423 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
FAN16G1697 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
FAN21G0899 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
FAN25G1535 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
Prupe.4G056400 Prunus persica HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
RcHm_v2.0_Chr5g0009911 Rosa chinensis HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
TWI38G0456 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 2.9e-27 125.6 66 86.4
Lj4g0011162 Lotus japonicus HOM05D003129 ORTHO05D004326 4.9e-27 124.8 66 84.8
Rhsim02G0138500 Rhododendron simsii HOM05D003129 ORTHO05D004326 4.9e-27 124.8 65 86.2
TAR627G0274 Trochodendron aralioides HOM05D003129 ORTHO05D004326 4.9e-27 124.8 66 84.8
DCAR_006587 Daucus carota HOM05D003129 ORTHO05D004326 6.4e-27 124.4 66 84.8
Duzib192G0848 Durio zibethinus HOM05D003129 ORTHO05D004326 6.4e-27 124.4 66 83.3
Medtr4g087935 Medicago truncatula HOM05D003129 ORTHO05D004326 6.4e-27 124.4 66 84.8
MD10G1285200 Malus domestica HOM05D003129 ORTHO05D004326 8.3e-27 124.0 66 84.8
Potri.011G062500 Populus trichocarpa HOM05D003129 ORTHO05D004326 8.3e-27 124.0 66 83.3
BraA05t20109Z Brassica rapa HOM05D003129 ORTHO05D004326 1.1e-26 123.6 66 83.3
arahy.Tifrunner.gnm1.ann1.32PFVB Arachis hypogaea HOM05D003129 ORTHO05D004326 1.4e-26 123.2 66 83.3
arahy.Tifrunner.gnm1.ann1.X0U75U Arachis hypogaea HOM05D003129 ORTHO05D004326 1.4e-26 123.2 66 83.3
EL10Ac8g20476 Beta vulgaris HOM05D003129 ORTHO05D004326 1.4e-26 123.2 66 83.3
A05p11620 Brassica napus HOM05D003129 ORTHO05D004326 1.9e-26 122.9 66 83.3
CDE02G2353 Ceratophyllum demersum HOM05D003129 ORTHO05D004326 1.9e-26 122.9 66 81.8
TPR.G16267 Trifolium pratense HOM05D003129 ORTHO05D004326 1.9e-26 122.9 65 84.6
ATR0602G129 Amborella trichopoda HOM05D003129 ORTHO05D004326 5.4e-26 121.3 65 83.1
Dinv14957 Davidia involucrata HOM05D003129 ORTHO05D004326 1.2e-25 120.2 70 78.6
Mapoly0091s0056 Marchantia polymorpha HOM05D003129 ORTHO05D004326 1.2e-25 120.2 66 78.8
MSTRG.15833 Avicennia marina HOM05D003129 ORTHO05D004326 2.1e-25 119.4 70 80.0
Oeu043093.1 Olea europaea HOM05D003129 ORTHO05D004326 2.1e-25 119.4 78 71.8
Actinidia18785 Actinidia chinensis HOM05D003129 ORTHO05D004326 3.5e-25 118.6 70 77.1
DCAR_019584 Daucus carota HOM05D003129 ORTHO05D004326 7.8e-25 117.5 70 77.1
Sabra04G0033600 Salix brachista HOM05D003129 ORTHO05D004326 1.3e-24 116.7 58 89.7
SGA_v2.0_scaffold66G22240 Striga asiatica HOM05D003129 ORTHO05D004326 1.7e-24 116.3 75 73.3
PSO541G6176 Papaver somniferum HOM05D003129 ORTHO05D004326 2.3e-24 115.9 65 80.0
PSO675G6268 Papaver somniferum HOM05D003129 ORTHO05D004326 2.3e-24 115.9 65 80.0
CSS0027425 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 3.0e-24 115.5 70 72.9
CSS0050257 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 3.0e-24 115.5 70 72.9
Migut.M01074 Erythranthe guttata HOM05D003129 ORTHO05D004326 3.0e-24 115.5 70 78.6
Rhsim04G0023800 Rhododendron simsii HOM05D003129 ORTHO05D004326 3.0e-24 115.5 70 74.3
vmacro09507 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 3.9e-24 115.2 69 75.4
Cc05_g11500 Coffea canephora HOM05D003129 ORTHO05D004326 5.1e-24 114.8 70 74.3
Lj1C835G5 Lonicera japonica HOM05D003129 ORTHO05D004326 5.1e-24 114.8 70 77.1
SMO364G0322 Selaginella moellendorffii HOM05D003129 ORTHO05D004326 5.1e-24 114.8 85 65.9
Nitab4.5_0000383g0360 Nicotiana tabacum HOM05D003129 ORTHO05D004326 1.5e-23 113.2 70 72.9
Nitab4.5_0001208g0080 Nicotiana tabacum HOM05D003129 ORTHO05D004326 1.5e-23 113.2 66 78.8
Ah.10g033800 Amaranthus hybridus HOM05D003129 ORTHO05D004326 1.9e-23 112.8 66 80.3
Zm00001eb203280 Zea mays HOM05D003129 ORTHO05D004326 2.5e-23 112.5 66 77.3
HPP92_002946 Vanilla planifolia HOM05D003129 ORTHO05D004326 3.3e-23 112.1 66 77.3
CAN.G1119.14 Capsicum annuum HOM05D003129 ORTHO05D004326 4.3e-23 111.7 70 71.4
Solyc10g007150.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 4.3e-23 111.7 70 71.4
Sopen10g003050 Solanum pennellii HOM05D003129 ORTHO05D004326 4.3e-23 111.7 70 71.4
SGA_v2.0_scaffold130G34337 Striga asiatica HOM05D003129 ORTHO05D004326 4.3e-23 111.7 70 71.4
SGA_v2.0_scaffold70G23706 Striga asiatica HOM05D003129 ORTHO05D004326 7.3e-23 110.9 70 71.4
SalBow7G0623 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.2e-22 110.2 73 67.1
SalBow7G1178 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.2e-22 110.2 73 67.1
Os02g0313400 Oryza sativa ssp. japonica HOM05D003129 ORTHO05D004326 2.1e-22 109.4 66 74.2
Pp3c3_22040 Physcomitrium patens HOM05D003129 ORTHO05D004326 2.1e-22 109.4 66 74.2
SHI34908 Sapria himalayana HOM05D003129 ORTHO05D004326 2.8e-22 109.0 66 72.7
Zm00001eb235260 Zea mays HOM05D003129 ORTHO05D004326 2.8e-22 109.0 66 72.7
AagrBONN_evm.TU.Sc2ySwM_228.5751 Anthoceros agrestis HOM05D003129 ORTHO05D004326 4.7e-22 108.2 66 74.2
unitig_0.g2268 Utricularia gibba HOM05D003129 ORTHO05D004326 1.1e-21 107.1 70 68.6
MSTRG.14212 Avicennia marina HOM05D003129 ORTHO05D004326 1.4e-21 106.7 70 68.6
Migut.H01970 Erythranthe guttata HOM05D003129 ORTHO05D004326 2.4e-21 105.9 70 68.6
unitig_699.g19233 Utricularia gibba HOM05D003129 ORTHO05D004326 3.1e-21 105.5 66 75.8
Peaxi162Scf00027g00106 Petunia axillaris HOM05D003129 ORTHO05D004326 4.0e-21 105.1 70 64.3
CBR_g34638 Chara braunii HOM05D003129 ORTHO05D004326 8.9e-21 104.0 92 56.5
RcHm_v2.0_Chr7g0217661 Rosa chinensis HOM05D003129 ORTHO05D004326 1.2e-20 103.6 73 64.4
AL4G11550 Arabidopsis lyrata HOM05D001159 ORTHO05D001712 2.2e-19 99.4 55 83.6
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 2.9e-19 99.0 66 65.2
CAN.G361.6 Capsicum annuum HOM05D003129 ORTHO05D004326 9.9e-12 73.9 37 89.2
unitig_52.g17399 Utricularia gibba HOM05D003129 ORTHO05D004326 3.8e-11 72.0 37 83.8
BolC4t23083H Brassica oleracea HOM05D003129 ORTHO05D004326 1.9e-10 69.7 37 83.8
C05p27700 Brassica napus HOM05D003129 ORTHO05D016405 1.2e-09 67.0 66 54.5
BolC5t31490H Brassica oleracea HOM05D003129 ORTHO05D016405 1.2e-09 67.0 66 54.5
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 4.6e-09 65.1 48 62.5
BNapus_Darmor_BZH_scaffold_165p00060 Brassica napus HOM05D003129 ORTHO05D016405 6.2e-06 54.7 59 50.8


User provided reference genes

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