Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g29530 Coffea canephora HOM05D008837 ORTHO05D011237 2.1e-50 202.2 113 100.0
PGSC0003DMG400043889 Solanum tuberosum HOM05D008837 ORTHO05D006961 4.1e-14 81.6 116 45.7
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.6e-13 79.7 116 44.0
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 1.3e-12 76.6 116 44.8
Hma1.2p1_0415F.1_g148160 Hydrangea macrophylla HOM05D008837 ORTHO05D006961 1.7e-12 76.3 117 47.0
Oeu061026.1 Olea europaea HOM05D008837 ORTHO05D006961 3.0e-12 75.5 117 46.2
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.1e-11 73.6 117 44.4
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 3.3e-11 72.0 116 44.0
Potri.015G004800 Populus trichocarpa HOM05D008837 ORTHO05D011237 5.6e-11 71.2 113 46.0
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 4.7e-10 68.2 113 38.9
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 6.2e-10 67.8 113 40.7
Nitab4.5_0005040g0030 Nicotiana tabacum HOM05D008837 ORTHO05D006961 8.1e-10 67.4 116 42.2
Dinv29215 Davidia involucrata HOM05D008837 ORTHO05D006961 1.1e-09 67.0 114 41.2
PGSC0003DMG400003216 Solanum tuberosum HOM05D008837 ORTHO05D006961 1.4e-09 66.6 115 42.6
Actinidia08695 Actinidia chinensis HOM05D008837 ORTHO05D006961 3.1e-09 65.5 112 42.9
PGR042G1156 Punica granatum HOM05D008837 ORTHO05D011237 2.0e-08 62.8 115 40.9
Thecc.03G208100 Theobroma cacao HOM05D018669 ORTHO05D011237 2.6e-08 62.4 113 39.8
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 2.6e-08 62.4 112 37.5
COL.COLO4_14365 Corchorus olitorius HOM05D018669 ORTHO05D011237 4.4e-08 61.6 111 37.8
Nitab4.5_0000319g0160 Nicotiana tabacum HOM05D008837 ORTHO05D006961 4.4e-08 61.6 115 39.1
Potri.012G021602 Populus trichocarpa HOM05D008837 ORTHO05D006961 5.8e-08 61.2 114 44.7
Nitab4.5_0000319g0090 Nicotiana tabacum HOM05D008837 ORTHO05D006961 7.5e-08 60.8 122 37.7
Eucgr.A01407 Eucalyptus grandis HOM05D008837 ORTHO05D011237 9.9e-08 60.5 115 39.1
Duzib205G1426 Durio zibethinus HOM05D018669 ORTHO05D011237 1.3e-07 60.1 113 37.2
Gohir.A09G186700 Gossypium hirsutum HOM05D018669 ORTHO05D011237 1.7e-07 59.7 113 37.2
Eucgr.A01409 Eucalyptus grandis HOM05D008837 ORTHO05D011237 2.2e-07 59.3 115 39.1
Ah.13g070730 Amaranthus hybridus HOM05D008613 ORTHO05D011237 2.9e-07 58.9 112 36.6
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 3.7e-07 58.5 117 40.2
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 3.7e-07 58.5 115 34.8
Gorai.006G203600 Gossypium raimondii HOM05D018669 ORTHO05D011237 3.7e-07 58.5 113 34.5
Solyc03g082350.2 Solanum lycopersicum HOM05D008837 ORTHO05D006961 3.7e-07 58.5 116 42.2
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 6.4e-07 57.8 118 40.7
PGSC0003DMG400003217 Solanum tuberosum HOM05D008837 ORTHO05D006961 6.4e-07 57.8 113 38.1
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 8.3e-07 57.4 113 36.3
Nitab4.5_0014067g0010 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.1e-06 57.0 110 37.3
DCAR_020368 Daucus carota HOM05D008837 ORTHO05D006961 1.4e-06 56.6 115 41.7
Ciclev10017302m.g Citrus clementina HOM05D008837 ORTHO05D011237 1.9e-06 56.2 112 33.9
Sopen03g022070 Solanum pennellii HOM05D008837 ORTHO05D006961 1.9e-06 56.2 115 40.0
DCAR_008982 Daucus carota HOM05D008837 ORTHO05D006961 2.4e-06 55.8 120 38.3
FAN04G2016 Fragaria x ananassa HOM05D008613 ORTHO05D006961 3.2e-06 55.5 110 37.3
Oeu023688.1 Olea europaea HOM05D008613 ORTHO05D006961 3.2e-06 55.5 110 41.8
FvH4_5g10560 Fragaria vesca HOM05D008613 ORTHO05D006961 4.1e-06 55.1 110 37.3
FAN08G0050 Fragaria x ananassa HOM05D008613 ORTHO05D006961 4.1e-06 55.1 107 38.3
FAN18G1327 Fragaria x ananassa HOM05D008613 ORTHO05D006961 4.1e-06 55.1 110 37.3
Gohir.D09G181600 Gossypium hirsutum HOM05D018669 ORTHO05D011237 4.1e-06 55.1 113 34.5
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 7.1e-06 54.3 110 41.8
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 9.2e-06 53.9 111 33.3


User provided reference genes

Program Settings